Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 113 1e-19 seq23 102 2e-16 >seq3 Length=27041879 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || || ||||| ||||||||||| |||| | || Sbjct 11044845 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 11044904 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 11044905 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCC 11044964 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 || || || || ||||| ||||| |||| | | |||| || || || || Sbjct 11044965 CTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAG 11045024 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 11045025 GGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 111 bits (122), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG- 151957 || ||||| || ||||| || ||||||||||| |||| | || | |||||||| || Sbjct 11046872 AGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11046931 Query 151958 -GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| || || | Sbjct 11046932 TGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 11046989 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || || |||| | | | || ||| ||| || || || || || |||| Sbjct 11046990 TCTTGGCCTTAACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTTT 11047046 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| ||||| || ||||| |||| |||||| || Sbjct 11047047 TGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 11047080 >seq23 Length=24361341 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || |||| |||||| || | | || Sbjct 2609147 CCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGT 2609088 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 2609087 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 2609028 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 2609027 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 2608971 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||| || |||||||| | |||||| || Sbjct 2608970 CAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820430416775