Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq24 178 2e-39 seq4 120 4e-22 seq23 95.1 2e-14 >seq24 Length=30408201 Score = 178 bits (196), Expect = 2e-39 Identities = 207/278 (74%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || ||||| ||| | | ||| | |||||||| | || || Sbjct 29677463 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 29677404 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 29677403 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 29677344 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 29677343 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 29677284 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | |||||||| ||||| | | ||| ||| ||||||||||| || |||||||| || Sbjct 29677283 GACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 29677224 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || ||| ||| || || || ||||||||||| Sbjct 29677223 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 29677186 Score = 132 bits (146), Expect = 7e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| |||||| || ||| |||||| ||| ||||| || Sbjct 29675875 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 29675816 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| ||| || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 29675815 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 29675756 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 29675755 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 29675715 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| ||||| ||||| ||||| ||||| || | | Sbjct 29674895 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 29674836 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| | |||||||||||| |||| | || ||||| ||||| | Sbjct 29674835 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAGGTA 29674776 Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052 ||||| |||||||||| || ||||| Sbjct 29674775 GGAGGACTGTCAATCATATGGGATC 29674751 >seq4 Length=33259606 Score = 120 bits (132), Expect = 4e-22 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||||||| |||| ||||||||||| || |||||||| ||| |||||||| Sbjct 26560872 CCAATAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCCTCCCAGGTCGGATGTTCG 26560813 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| || Sbjct 26560812 CCTTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 26560753 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTT--TTCGGGCA 9412 || || || || || || || | || || ||||| || || ||| || | | ||| | Sbjct 26560752 AGGCCTGGGACGAGCCCGAACACTTCCTGTCCGACGGCGAGCCGC-TGCTCAGTGGGGAA 26560694 Query 9413 --CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTC 9470 |||| ||| || | ||||| ||| |||| || ||| ||| || ||||| || Sbjct 26560693 ACCTTC---AGGGTACACCATGTCCACTGGGACCTCAGACACCATGGGAGGGTACATCTC 26560637 Query 9471 ACCGTCAATCATCTG 9485 || | |||| ||| Sbjct 26560636 CCCATTGATCAGCTG 26560622 >seq23 Length=24361341 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| || || | || ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 9080118 CGAAGCCGACTTTGCCTCCGAATGTGCTGGGCTTCCAGTATCCTGGGGAACATATGGGGT 9080177 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| ||||||||||||||| || || || |||| || | ||||| || || || | Sbjct 9080178 TACCCAGGAGGCCTTTGAGGGAAAAGGGGGCACCCATTTCCACCATGCTTTCTCCAAATA 9080237 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | || || || | | | |||| || || |||| ||| | || | || |||| || Sbjct 9080238 TCGCCCCTGGTCGAGTCCTCTCCAGCAGTAACCCGGGGTAAAATTCAAGAGTGTCGATGT 9080297 Query 8541 CTCCGTAAAG 8550 | || || || Sbjct 9080298 CCCCATAGAG 9080307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716876575976000