Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 159 8e-34 seq3 149 2e-30 >seq23 Length=24361341 Score = 159 bits (176), Expect = 8e-34 Identities = 162/209 (78%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| ||||| || || || |||||||| ||||||| ||| || | Sbjct 2608929 CAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGG--AGCCCAGTG 2608986 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||| |||||||| || ||||| ||||||| Sbjct 2608987 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 2609046 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || | || || |||| Sbjct 2609047 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACG 2609106 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || || || || ||| Sbjct 2609107 TCCAGAAGGAGTCCACCCTCCACCTGGTT 2609135 >seq3 Length=27041879 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||||||| | ||| Sbjct 11045063 CAGATCTTCGTAAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAACCCAGCGAC 11045004 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 11045003 ACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAG 11044944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || |||| || ||| || Sbjct 11044943 AGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 11044884 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || || |||||| Sbjct 11044883 CAGAAAGAATCCACCCTCCACCTTGTT 11044857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730814429850