Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 seq23 111 1e-19 >seq3 Length=27041879 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41656 CAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAG 41715 ||| || || ||| ||||||||| ||||| |||||||| |||||||| | || || || Sbjct 11046871 CAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11046930 Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||| ||||| || ||||| | ||| ||||| | ||| | || |||||| ||| ||| Sbjct 11046931 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11046990 Query 41776 TTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 || ||| |||| || | | || || | ||||||||||| || || ||||| | Sbjct 11046991 CTTGGCCTT-AACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGC 11047049 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || || || || |||||||| || Sbjct 11047050 CGGTGAGGGTTTTCACAAAGATCTGCATCTT 11047080 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| || ||||| ||||| |||||||| |||||||| Sbjct 11044849 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 11044908 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 11044909 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 11044968 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| |||||| ||| |||| | || |||||||| | |||||||||| Sbjct 11044969 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAG 11045024 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || ||||||||||| |||||||| Sbjct 11045025 GGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 >seq23 Length=24361341 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| | ||| ||||| || |||||||| | || || Sbjct 2609134 ACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 2609075 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| || || ||||| | ||| ||||| | |||| || || || ||| || Sbjct 2609074 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TG 2609016 Query 41774 ATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | ||||| | ||| || | | || || | ||||||||||| || || || || Sbjct 2609015 AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTT 2608956 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || |||||||||||||| || Sbjct 2608955 CCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303855530000