Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq25 423 2e-113 >seq25 Length=32766887 Score = 423 bits (468), Expect = 2e-113 Identities = 1270/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | | ||| || | | | | ||||| || || || Sbjct 10519918 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10519977 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || ||||| |||| || || || ||||| || || ||||| |||| || Sbjct 10519978 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10520037 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 10520038 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 10520097 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | | ||| || || || || | | ||| | |||||| Sbjct 10520098 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10520157 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | ||| | | | || || || || || ||| || ||| | Sbjct 10520158 TCGGTCGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGC 10520215 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 | | || || ||||| || || || | || || || || || ||||| | || Sbjct 10520216 CCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGG 10520275 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 ||| || ||||| ||||| |||| | || || || ||||| | || || || | Sbjct 10520276 CGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAAG 10520335 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | || || || ||||| || | || || || || || ||||| || || | Sbjct 10520336 GGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10520395 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| |||| || || || || || || || || || | Sbjct 10520396 GGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTGT 10520455 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA- 53683 |||||||| | || ||||| ||| || ||| || || || || |||| Sbjct 10520456 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGC 10520514 Query 53684 TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 ||| | || ||||||| | || || || ||||| || || ||||| ||||| | Sbjct 10520515 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC- 10520573 Query 53741 GCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | || | | | ||| ||||| || || || ||||||||||| || | | Sbjct 10520574 -CTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 10520632 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || || || ||||| |||| || || ||||| || || ||| | || || || |||| Sbjct 10520633 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTT 10520692 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | ||||||| || || || || | ||||| | ||||| | | ||| || Sbjct 10520693 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTTTTCACTC 10520752 Query 53919 TCTTTTCTCTTTCGTATA--GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 || ||| | || ||| ||||| | || || ||||| |||||||| | ||| Sbjct 10520753 TCCCTTCCTTCTCATATTTGGTGTAGAGCTTC--TCGAACTCCTCTCCCCAGCACTCGTC 10520810 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 || |||||||| || ||||||||||| ||||| || || || ||||| || Sbjct 10520811 CAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTT 10520870 Query 54037 CATAAAGAGATCAGGAATCCA-AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 ||| || || ||||| ||||| ||| || ||| || ||||||| ||| || ||||| | Sbjct 10520871 CATGAACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCT 10520929 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 ||||||| ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 10520930 TTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGAT 10520989 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | || || | ||||| || ||||| || | ||| | ||||||||| | Sbjct 10520990 ACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGT 10521049 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | |||||||||| ||| || | | || ||||| || ||||| || | ||| |||| Sbjct 10521050 TGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGC 10521109 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 |||| | | || || || | | | || ||||| || || || || || | Sbjct 10521110 TTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGA 10521169 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| | || | || || |||||||| || || || || ||| ||||| || | Sbjct 10521170 GCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCA 10521229 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || || || |||| || | || | || || || || || | ||| ||||| |||| Sbjct 10521230 GGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGT 10521289 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || ||||| || || || || || ||||| ||||||| || | ||| || || | Sbjct 10521290 GGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCC 10521349 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || || | || | ||| | ||||||||| |||| || | | || || Sbjct 10521350 CGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGT 10521409 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || ||||||| |||||| |||| ||| || || || || ||||||| || || | Sbjct 10521410 TGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAAT 10521469 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 ||| |||||||| || |||||||| ||||| | || | || | || | | Sbjct 10521470 CTCTGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCG 10521529 Query 54696 TAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAAT 54751 | | ||| || || || ||||| | |||| || ||| ||||||||| || Sbjct 10521530 T-CTGCTTGGAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAAC 10521585 Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | |||| |||||| || || || | || || || || || || || || || ||||| Sbjct 10521586 AGGTCCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCA 10521645 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || || ||||| || ||||| || || || |||| || || ||||| || || || Sbjct 10521646 ATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCC 10521705 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 |||| || ||||| | || || || || || || | || | || || || |||||| Sbjct 10521706 GCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTC 10521765 Query 54932 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 54990 || | || | | ||||| | | || | ||| | ||| || || || |||| || Sbjct 10521766 ATGGTGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGAT 10521824 Query 54991 ACGAGATGTGATTTTATCAAACATGAC 55017 || || |||||||||||||||||||| Sbjct 10521825 GCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721414462000