Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25 152 4e-32 seq13 104 2e-17 seq18 100 2e-16 seq16 100 2e-16 >seq25 Length=32766887 Score = 152 bits (168), Expect = 4e-32 Identities = 467/707 (66%), Gaps = 24/707 (3%) Strand=Plus/Plus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | ||||||||||||| Sbjct 10520026 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 10520085 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||||| ||| || || || || ||| Sbjct 10520086 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTC 10520145 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||||| || || || | | || | ||||| | | | || || | || Sbjct 10520146 CAGTCCCAAAG---GTCGG-----TCGGCGTC-TTCTC--CCACAT-GTCGT---ACTGG 10520190 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| || || | || ||||| || ||||| ||| | ||| Sbjct 10520191 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 10520250 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 ||||||||||| ||||||| ||||| ||| ||||| || || || || ||||| Sbjct 10520251 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGAT-GTTGA- 10520308 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| || ||| || ||| | | | || || | || | || |||||||||| | Sbjct 10520309 GCAGCTGAGCTTCGGGACTTTCGAAAGGG-TGCCGCATCAGGATGAAGGCGTCGGCCAGA 10520367 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 ||||| | ||||| ||||| || | || || ||| |||| | |||| Sbjct 10520368 CCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACC 10520427 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGT 133751 || |||| ||||| |||||||||||||||||| || ||||| | || || | Sbjct 10520428 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 10520487 Query 133752 TTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATA 133811 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 10520488 GCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATG 10520544 Query 133812 CTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAG 133871 ||| || || || |||||| ||||| || | | |||| || | ||| | |||| Sbjct 10520545 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAG 10520604 Query 133872 AGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCC 133931 ||||||||||| ||||||||||||| || | || ||||| | |||||| ||| Sbjct 10520605 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10520664 Query 133932 TTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 ||||| |||||||| || ||||||||| | || ||||| ||| Sbjct 10520665 TTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT 10520711 >seq13 Length=27080333 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| ||| || ||||| ||| || ||||| ||||| Sbjct 11062561 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 11062620 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || ||||||||||| || || || ||| Sbjct 11062621 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 11062680 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || ||| ||||| | ||| | ||||||||||| || ||| Sbjct 11062681 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 11062740 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 11062741 TTCACAAAGATCTGCAT 11062757 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || ||||| || |||||||| ||| || ||||| ||| || ||||| Sbjct 11060543 GTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 11060602 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| ||||| |||| || | |||||| || || || ||||||||||| || || || Sbjct 11060603 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 11060662 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || || ||||| | ||| | ||||||||||| Sbjct 11060663 GGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGT 11060722 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 11060723 GAGGGTCTTGACAAAGATTTGCAT 11060746 >seq18 Length=80077792 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || || ||||| ||| || ||||| |||||| Sbjct 51870064 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCC 51870123 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 51870124 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 51870183 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | || | |||||| || ||| ||||| | ||| | |||||| Sbjct 51870184 AGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTG 51870243 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 51870244 CCAGTGAGGGTCTTGACGAAGATCTGCATG 51870273 >seq16 Length=24388307 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || | |||||| || || ||||| ||| || Sbjct 2613255 CACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTC 2613196 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || Sbjct 2613195 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 2613136 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | ||| || || ||| ||||| | ||| | || || Sbjct 2613135 AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 2613076 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||||||||| Sbjct 2613075 CCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830267817300