Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002214.1 Length=39807 Score E Sequences producing significant alignments: (Bits) Value seq18 452 1e-122 >seq18 Length=80077792 Score = 452 bits (500), Expect = 1e-122 Identities = 1035/1535 (67%), Gaps = 46/1535 (3%) Strand=Plus/Minus Query 1005 TTTTTTGATTAAGT-AATGAAGGAGGTGGATGTATTGGGCTAAATCAACGACAAAAGCTA 1063 |||||||||| || |||| ||| | |||| |||||| |||||||| |||||||| | Sbjct 30100598 TTTTTTGATTTTGTGAATGGAGGTGATGGAC--ATTGGGTTAAATCAAAGACAAAAGATG 30100541 Query 1064 TTTGTTAGCGAGTATATCAAGCTAGGAAATGGAACTCAAGCAGCTATAAATGCTGGCTAT 1123 |||| ||||||||| | | | ||| |||| |||| | || ||| ||| || ||| Sbjct 30100540 TTTGCGAGCGAGTATTTGAGGACAGGCAATGTCTATCAATCTGCAATATTTGCCGGTTAT 30100481 Query 1124 AGTCCGAAAACTTCTGGAGCGCAA--GCTGAgaaattgttgaaaaaagttgaaataaaaa 1181 ||| || | | || ||| ||| ||||| | |||| | || |||| Sbjct 30100480 AGT--GAGGCTTACGCCAGAACAACCGCTAGTAAATTACTAGAAAATGCAAGCATTAAAA 30100423 Query 1182 actccataaacgcagaaattgaaaaaatGCACAACGAGAACATCATGGACGCCAAGGAAG 1241 | |||| | |||||| |||| |||||| | |||||||| || ||||| || | Sbjct 30100422 CGTTCATACAAACAGAAACCAAAAAGATGCACGATGAGAACATTTTGAGTGCCAAAGAGG 30100363 Query 1242 CCTTATCCATTTTATCCGATATTGCAAGGGGCAAGCGTGATGAAGAAATAGTCATGATGA 1301 || | || ||| | || || |||||||| || ||||| ||||||| | | ||||||| Sbjct 30100362 CCCTTTCAATTCTTTCAGACATTGCAAGAGGAAAGCGACTTGAAGAAGTTTTGATGATGA 30100303 Query 1302 ACCCAGTTAGTGGCGAAGTTGAGCGTGTCACAAGGAAAGCTGATAATAACACCGTTATCA 1361 | || || | ||| || || || | || || | || || ||||||||||| ||||||| Sbjct 30100302 ATCCGGTAACTGGTGAGGTGGACAGAGTTACGAAAAAGGCGGATAATAACACAGTTATCA 30100243 Query 1362 AGGCTATCACCGAAATTCTGAAACGCTATCCAACAACTAAACAAGCCGAGAAGTTACAGC 1421 | || || | ||||| ||||||| ||||| || |||||||||| || || | ||| Sbjct 30100242 AAGCGATAGCTGAAATATTGAAACGATATCCGACTGCTAAACAAGCTGAAAAACTTGAGC 30100183 Query 1422 TTGAAATAGAAAAACTCAAATCTCAAATTGGTGGAGATGAAGGACAAGATGAAAAGATAG 1481 |||||||||| ||||| ||||||||||||||| ||||| | || || || ||| | | Sbjct 30100182 TTGAAATAGAGAAACTTAAATCTCAAATTGGTATGGATGACGAGCATGACGATAAGCTTG 30100123 Query 1482 CTG-GCTTCCTAAACCTTATCAAAGGAGCTGTAAACAATGGACTTGAGTAAGCTCTATAC 1540 | | || |||| ||| | | ||| ||| | || ||| |||||| || | || Sbjct 30100122 TAGAGTTTGCTAAGGCTT-TGAGAGGTGCTTTTAAT----GACA--AGTAAGTTC-ACAC 30100071 Query 1541 CAAGCGACAGTTAGAAGTGCTTAATTACATCTGGAATCACGACTGGTTCATCTGTGGGCT 1600 ||| ||| | |||| |||| | | || | |||| || || || || | Sbjct 30100070 CAAA--ACAAGAACAAGTCCTTAGACGAGTTTTAAACGATGACTTCTTTATTTGCGGTTT 30100013 Query 1601 TCATGGAGCTAAACGAGCGAGTAAGACCGTTGTTAACAATGATACATTTGTAACCGAATT 1660 ||||| || || || | ||||||| ||| | || ||| || | | ||| | Sbjct 30100012 GCATGGTGCAAAGCGTTCAGGTAAGACTGTTTTGAATAATATGGTCTTCCTGAATGAAAT 30099953 Query 1661 AAGTCGTGTCAGAAAAATTGCTGACCGATTAGGTGTAGATGAGCCTATTTACATTTTGGC 1720 | | || |||| ||| ||||| |||| | ||||| || || || |||||||| Sbjct 30099952 TGATAGAGTTAGAACAATAGCTGATAAGTTAGACATTGATGAACCGATGTATATTTTGGC 30099893 Query 1721 AGGTACGTCTTCAACAGCAATTCAGAATAACGTCTTACAAGAACTTTATAACAAGTATGG 1780 || ||||||||||| | || || ||||| | | |||||||| ||||||| || || Sbjct 30099892 TGGGACGTCTTCAACTTCGATACAAAATAATATTATCCAAGAACTCTATAACATGTTTGA 30099833 Query 1781 CTTTGAACCAAAATACGATAAACATGGCTCTTTCGTTTTCTGTGGTGTCAAAGTCGTGCA 1840 |||| |||||||| || ||||| || | || | | || || ||||| || | || Sbjct 30099832 TATTGAGCCAAAATATGACAAACACGGAGCGTTTACTCTTTGCGGAGTCAAGGTTATTCA 30099773 Query 1841 GGTCTATACTGGCTCTATATCTGGTCTTAAACGTGCCCGTGGTTTTACAGCGTTCGGAGC 1900 || |||||||| || || || ||| | ||||| || |||||||| ||||| || ||||| Sbjct 30099772 AGTTTATACTGGTTCAATTTCAGGTTTAAAACGAGCTCGTGGTTTCACAGCTTTTGGAGC 30099713 Query 1901 TTATGTCAACGAAGCGTCGCTAGCCAATGAGTTTGTTTTTAAAGAGATTATCTCACGCTG 1960 ||||| ||||| || ||| | |||||||| || || ||||| || |||||||| || Sbjct 30099712 CTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTGTTCAAAGAAATCATCTCACGTTG 30099653 Query 1961 TTCTGGTGATGGTGCTCGTGTTGTTTGGGATAGTAACCCAGATAATCCTAATCACTGGCT 2020 ||| || || ||||| || |||||||||||||||||||||| | || | |||||||| Sbjct 30099652 TTCGGGAGAGGGTGCACGGATTGTTTGGGATAGTAACCCAGACATCCCGACCCACTGGCT 30099593 Query 2021 TAACCGAGATTATATCGGTAAGAACGACGGAAAGATTATAGATTTTAGTTTCAAGCTAGA 2080 | || ||||||||| ||||| | ||| ||||| ||| |||||||||||| Sbjct 30099592 CAGACGGGATTATATCAACTCTGGCGACGATATGATCATAGACTTTCATTTCAAGCTAGA 30099533 Query 2081 TGATAATACTTTCTTATCGAAACGCTATATCGATTCTATCAAGGCAGTAACGCCAAAGGG 2140 ||||||||| ||| | || | | || ||| ||||||| | || ||| || Sbjct 30099532 TGATAATACATTCATGTCTGACAGATACCGCGAAAATATCAAGAATGCCACACCAGCTGG 30099473 Query 2141 TAAGTTCTACGATAGAGATATCTTAGGACACTGGACAGTAGCAGAGGGAGCTATCTACGC 2200 | || || || |||| ||| | || ||| | | ||||| | | | || Sbjct 30099472 TGTATTTTATGACCGAGACATCCTTGGTTTGTGGGCGACTGGTGAGGGCGTTGTATATCG 30099413 Query 2201 TGATTATGACAGCAAGATACACG-TAGTTGATGAGTTGCCAGA------AATGAAACGCT 2253 ||||| | ||| ||| | | | | || ||| | | ||||| || ||| || Sbjct 30099412 TGATTTT---AGCGAGA-ATATGTTTGTGGATAACGTACCAGAAGATATAACTAAAGTCT 30099357 Query 2254 ATTTTGGGGGCATTGACTGGGGATATACTCACTACGGATCTATCGTGATTGTTGGTGAAG 2313 || ||| | |||||||||| ||| |||| || ||||| || |||| || ||| Sbjct 30099356 ATGCTGGTG---TTGACTGGGGGTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAA 30099300 Query 2314 GAGTAGATAAT--AACTTCTATCTTGTCGATGGCGTACGAGCA-CAATTCAAAGAGATTG 2370 ||| | | || ||||| | || || ||| || |||| ||||||||||| Sbjct 30099299 CCTCAGACGGTTCAGTTTATATCT--TAGA-GGAACACGCTCATCAATACAAAGAGATTG 30099243 Query 2371 ACTGGTGGGTAGAGCAAGC--AAGGAAGCTTACTGGCATCTATGGTAACATTCCGTTTTA 2428 ||| |||||||| | || ||| || | | | ||||| || ||| |||||| Sbjct 30099242 ACTTTTGGGTAGACCTTGCTAAAGAAATCAAAAAACGA--TATGGCAATATTACGTTTTG 30099185 Query 2429 TGCTGATAGTGCCCGACCTGAACACGTAGCAAGGTTTGAAAACGAAGGATT--TGATATT 2486 || ||||| || |||||||||||||| || || ||| | | || | | || ||| Sbjct 30099184 GGCAGATAGCGCACGACCTGAACACGTTGCTAGATTTCAGAGAGAGCAACTGAAGACATT 30099125 Query 2487 AGCAACGCTAACAAGTCAGTCATAGCTGGTATCGA 2521 ||||||||||| | ||| | |||||||||| Sbjct 30099124 --TAACGCTAACAAAGCGGTCTTGTCTGGTATCGA 30099092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127260762219450