Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13 111 2e-19 seq18 104 3e-17 seq8 104 3e-17 seq24 102 9e-17 seq22 95.1 1e-14 seq11 95.1 1e-14 seq6 95.1 1e-14 seq2 95.1 1e-14 seq25 91.5 2e-13 seq1 91.5 2e-13 seq10 82.4 9e-11 >seq13 Length=27080333 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || | ||| || || | || || ||||| || ||||| || Sbjct 11060556 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 11060615 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||| ||| ||| || |||| || Sbjct 11060616 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 11060675 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | |||||| || | |||||||||||||| || || ||||| ||| Sbjct 11060676 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 11060735 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 11060736 AAGATTTGCAT 11060746 Score = 104 bits (114), Expect = 3e-17 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 60054 ATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||||||| || |||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 20829156 ATGAAAAAGTTGAGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 20829215 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 |||||||||||||||||| |||||| ||| Sbjct 20829216 GGATACTCACCACTATACTAACGAGGAGTGA 20829246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | ||| || || | || || |||||||| || || || Sbjct 11062566 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 11062625 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||| ||| ||| || || | | Sbjct 11062626 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 11062685 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || | ||||| || | |||||||||||||| || || || || || Sbjct 11062686 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCAC 11062745 Query 43172 AAAGATTTGCATTTT 43186 |||||| ||||| || Sbjct 11062746 AAAGATCTGCATCTT 11062760 >seq18 Length=80077792 Score = 104 bits (114), Expect = 3e-17 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 42929 TAAAATATTATATTTATTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGT 42988 ||||||||| | | ||| || || || || || | ||| | |||| || | || Sbjct 51870022 TAAAATATTGAACTCATT----TACTGGCCACCCCTCAGACGGAGGACCAGGTGGAGGGT 51870077 Query 42989 GCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGC 43048 | |||||| || |||||||| || | ||| || || | || || |||||||| ||||| Sbjct 51870078 GGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGC 51870137 Query 43049 GAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAG 43108 || || || | ||||||||| | || | || |||||| ||| || || |||| Sbjct 51870138 AAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCTTGAC 51870197 Query 43109 CGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 || | | ||||| || | || || || | |||||||||||||| || || ||||| Sbjct 51870198 GTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTT 51870257 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 51870258 GACGAAGATCTGCAT 51870272 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 49717158 AAACTTCACTCCCCGTCGGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACT 49717099 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||| Sbjct 49717098 CACCACTGTACTAACGAGGA 49717079 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47538332 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47538273 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 47538272 TACTAACGAGGA 47538261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47538964 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47538905 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 47538904 TACTAACGAGGA 47538893 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47539490 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47539431 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 47539430 TACTAACGAGGA 47539419 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47535984 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47536043 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 47536044 ATACTAACGAGGA 47536056 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47536775 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47536716 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 47536715 ATACTAACGAGGA 47536703 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47537282 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47537223 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 47537222 ATACTAACGAGGA 47537210 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47537789 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47537730 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 47537729 ATACTAACGAGGA 47537717 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||| |||||||||||||||| |||| ||||| ||||||| Sbjct 73132835 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTTACCACTA 73132776 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 73132775 TACTAACGAGGA 73132764 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| || | ||||||||||||| ||||||||||||||||| ||| |||||||||||||| Sbjct 67973194 TCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCACCACTAT 67973253 Query 60127 ACTACCGAGGA 60137 |||| |||||| Sbjct 67973254 ACTAACGAGGA 67973264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| |||||||||| |||||||| | ||||| Sbjct 30646356 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCATGACAGGCAGGGATACT 30646297 Query 60118 CACCACTATACTACCGAGGATTGAATATA 60146 ||||||| ||||| |||||| ||||||| Sbjct 30646296 CACCACTGTACTAACGAGGA--GAATATA 30646270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 63686997 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTTTCCCGCGTGACAGGCGGGGATACT 63686938 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||| Sbjct 63686937 CACCACTGTACTAACGAGGA 63686918 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct 58017609 GGGAATCGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCACCACTATACTAACGAG 58017668 Query 60136 GA 60137 || Sbjct 58017669 GA 58017670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||| |||| ||||| ||||||| Sbjct 73132642 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTTACCACTA 73132583 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 73132582 TACTAACGAGGA 73132571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 75847269 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 75847210 Query 60118 CACCACTATACTA 60130 ||||||| ||||| Sbjct 75847209 CACCACTGTACTA 75847197 >seq8 Length=30223615 Score = 104 bits (114), Expect = 3e-17 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 29057111 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 29057170 Query 60118 CACCACTATACTACCGAGGATTGAATATATA 60148 ||||||||||||| |||||| ||| ||||| Sbjct 29057171 CACCACTATACTAACGAGGA--GAACATATA 29057199 >seq24 Length=19721749 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 2786323 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 2786264 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 2786263 TATACTAACGAGGA 2786250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 16613643 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 16613702 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 16613703 CACCACTATACTA 16613715 >seq22 Length=23629796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 20444428 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 20444487 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||| Sbjct 20444488 CACCACTGTACTAACGAGGA 20444507 >seq11 Length=33594876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 4790863 AAACTTCACTCCCCGTAGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 4790804 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| |||||| Sbjct 4790803 CACCACTATACTAACGAGGA 4790784 >seq6 Length=22489619 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||| ||||||||||||| ||||||||||| Sbjct 21970899 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGGGATACTCACCAC 21970957 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 21970958 TATACTAACGAGGA 21970971 >seq2 Length=25664663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 8170420 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 8170479 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||| Sbjct 8170480 CACCACTGTACTAACGAGGA 8170499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 22690460 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 22690401 Query 60136 GA 60137 || Sbjct 22690400 GA 22690399 >seq25 Length=32766887 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| |||||||||||||||||||| ||||| Sbjct 31102289 AAACTTCACTCCCCGTCGGGGAATCGAACCCCTGTCTCCCGCGTGACAGGCGGGGATACT 31102230 Query 60118 CACCACTATACTACCGAGGA 60137 | ||||||||||| |||||| Sbjct 31102229 CGCCACTATACTAACGAGGA 31102210 >seq1 Length=30011118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 21638672 AAACTTCACTCCCCGTCGGGGAATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACT 21638731 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| ||||| Sbjct 21638732 CACCACTGTACTAATGAGGA 21638751 >seq10 Length=29643077 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || |||| | | ||||||||||||| |||||||||||||||||| | ||||| Sbjct 13638550 AAACTTCACTCCCTGTCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCAGGGATACT 13638609 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||| Sbjct 13638610 CACCACTGTACTAACGAGGA 13638629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817421307000