Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4 208 5e-49 >seq4 Length=29445952 Score = 208 bits (230), Expect = 5e-49 Identities = 434/640 (68%), Gaps = 10/640 (2%) Strand=Plus/Plus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || || ||| | || |||||||| ||||| || ||| | || ||||||||||| Sbjct 9217626 AGTGAGGAGGAACTAAATTTTCCCATTGCATACTCCATAGTGATACACGAGAAGATTGAG 9217685 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || || ||| | | ||||| || |||||||| ||||||||||| | Sbjct 9217686 ATGTTTGAACGACTCCTACGATCTATTTATGCTCCACAGAACATCTACTGTGTCCATATT 9217745 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || ||||||| | | |||| | |||| || ||| || |||||||||| ||| Sbjct 9217746 GACCTGAAGTCTTCCCTGTCTTTTCACAAGGCTGTGAAGAAAATAGTTTCCTGCTTTCCC 9217805 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||| || | |||||||| || | || || ||||| || ||||||||||| || Sbjct 9217806 AATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTACAG 9217865 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTTA 107990 || || |||||||| ||| |||| |||| || ||| ||| | |||| ||| | Sbjct 9217866 GCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCAGTGGAGATACCTT 9217922 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||||| || ||||||||||| ||||| || ||||| |||||||| ||| || Sbjct 9217923 TTGAATACCTGTGGGACAGACTTTCCCATTAAAACCAACAGGGAGATGGTGAAGGCTCTG 9217982 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || | | || || | |||||| |||| |||| | | ||| | ||| ||| | Sbjct 9217983 AAAGTCCTTAATGGGAGGAACAGCTTGGAAACTGAAGCCACCAGTGACTACAAGAAAGCT 9218042 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG-CAAGATGAAGGA 108169 |||||| | |||| | | | || || ||| | | | | ||| | || ||| | Sbjct 9218043 CGCTGGCAGTACCACCACAATGTCACCAACAGGGT-CATCAGAACAGACGTGA-GAAAAA 9218100 Query 108170 CCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAG 108228 || || | || | ||| |||||| |||| || ||||| ||||||| ||| | | Sbjct 9218101 GCCCGCCACCCATCAGCAGCCCAATGTTCTCAGGAAACGCCTACTTTGTGGTCTCAAGGG 9218160 Query 108229 CCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAG 108288 ||||||| || | | | ||| | || | | | | || |||| |||| Sbjct 9218161 CCTTTGTGAAATACCTGATGCGGAACGGAGAGATTCAGAAATTCATGGAGTGGGAAAAAG 9218220 Query 108289 ACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| || || || ||||| ||| | ||||||||||| || Sbjct 9218221 ACACATACAGTCCAGACGAGCACATGTGGGCCACCCTGCA 9218260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348268693886850