Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq18 116 1e-21 >seq18 Length=80077792 Score = 116 bits (128), Expect = 1e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 7087 TATACACCACAAAATAAAGCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAA 7146 ||||| ||| |||| ||||||||| ||||||||||||||||| || || | ||||| Sbjct 59386107 TATACCCCATCAAATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAG 59386048 Query 7147 AATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTTGGGGTAAATCAGCC 7206 | | ||||| ||| | || ||||| ||||||||| || || ||| || || || Sbjct 59386047 AGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCT 59385988 Query 7207 GAAAACTTGGCCAATTGGACTCATAAAGG-TCAATTAATCGGAGTTACTGGTAGTATTCA 7265 ||||| | || || ||| || | ||||| || || ||||| | || || |||| || Sbjct 59385987 GAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTT-ATCGGGATCACAGGCCGTATCCA 59385929 Query 7266 AACTCGAAACTACGAGAACCAACAAGGTCAACGAGT 7301 ||||| | ||||| ||||| ||||| ||||| || Sbjct 59385928 GACTCGTAGTTACGATAACCAGCAAGGACAACGTGT 59385893 Score = 98.7 bits (108), Expect = 3e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 169 TAAAAATCAATATAATCGGAAAATTGTTGCCCTATTTTATCTTTAGCAAATTTAGTGATA 228 || ||||||||||||| | ||| | | || || | || || || | | ||||| Sbjct 30118784 TAGAAATCAATATAATTCGCAAAGCGCTCTCCAATATCGTCCTTGGCTTGTGTGGTGATG 30118725 Query 229 TGAGTATAAATGTTCATTGTTGTTTTTAAATCTGCATGCCCTAGGCGATATTGAACTTGT 288 |||||||||| |||||| || ||||| | |||| ||||| || | ||| || |||||| Sbjct 30118724 TGAGTATAAACGTTCATGGTCGTTTTAAGGTCTGAGTGCCCAAGTCTATACTGGACTTGT 30118665 Query 289 TTTAAACTCATACCAGATTCAAAAAGTAAGCTTGCGTGAGTATGTCTAAATGCATGAATT 348 || || |||| || | |||||| || ||| || || ||||| || ||| | || ||| Sbjct 30118664 TTCAAGGTCATGCCTGCATCAAAACATAGGCTGGCATGTGTATGCCTGAATCCGTGGATT 30118605 Query 349 CTGATTGGT 357 | |||||| Sbjct 30118604 TTAATTGGT 30118596 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/169 (75%), Gaps = 11/169 (7%) Strand=Plus/Minus Query 1129 GCTTTGGTTTTAAAGCCACTTTTTTCAG-CGTACTGGCTTTTACCGTTCTTTTTTCCAAT 1187 ||||| |||| ||| || |||||||| | |||| | || |||||||||||||| |||| Sbjct 30117821 GCTTTAGTTTCAAACCC-CTTTTTTCTGGCGTATTTACTCTTACCGTTCTTTTTGCCAAG 30117763 Query 1188 ATAAGCTTTGAATTTATAAGCAGTAGTACCATTCTTCTTTTTATATGCTTTTATTTCCAA 1247 || || | ||| ||||| ||| || || |||||||| || | | |||| || Sbjct 30117762 GTAGACTGTAAATCCGTAAGCTGTATCTCCGTTTTTCTTTTTGTAAGACTCAATTTTCA- 30117704 Query 1248 AGTTGCTTTTTATACCTCATTTC-TGATAAAAT-GGTATAGTAAAAAGC 1294 ||| |||| ||||||||||| ||||||||| |||||| ||||||| Sbjct 30117703 --TTGATTTT--TACCTCATTTCTTGATAAAATGGGTATA--AAAAAGC 30117661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133747160293800