Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq25 168 1e-36 >seq25 Length=32766887 Score = 168 bits (186), Expect = 1e-36 Identities = 638/1000 (64%), Gaps = 32/1000 (3%) Strand=Plus/Minus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || |||||| | || ||| | || || |||||| | | |||||| ||||||| || Sbjct 10521869 GATGGGCGCCAGGAGCGCGTCATGTTTGATAAAATCACCTCCCGCATCCAGAAGCTTTGC 10521810 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGC 248556 || || ||| | || |||| || |||| | ||| || ||| || || |||| Sbjct 10521809 TACGGCCTGAACCCGGACTTTGTGGATCCGGCTCAGATCACCATGAAGGTGATACAGGGC 10521750 Query 248557 GTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTAC 248616 | |||| ||| || || || || || ||||| |||| ||||||| ||||| | Sbjct 10521749 TTGTACAGCGGCGTCACCACCGTGGAGCTAGACACGCTAGCAGCGGAGATCGCGGCCACC 10521690 Query 248617 ATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTT 248676 || ||| ||||||||||||| | | ||||||| |||||| |||||||| | || Sbjct 10521689 CTGACGACCAAACACCCCGACTACGCCATCCTGGCCGCGAGGATTGCCGTCTCCAACCTG 10521630 Query 248677 CACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATGGGA-- 248734 || || || || || || |||| ||| |||| ||||| ||||||| | Sbjct 10521629 CATAAGGAGACCAAGAAGGTGTTCAGCGAGGTGATGGAGGACCTGTTCGCCTATGTCAAC 10521570 Query 248735 ----TGG-----------TCGCCGATGACGTCCACAC-------CGTCAT--TCA-GGAC 248769 || || || |||| |||| | || ||| ||| ||| Sbjct 10521569 CCTCTGAACAAACGCCACTCTCCCATGATCTCCAAGCAGACGCTCGACATCGTCATGGAA 10521510 Query 248770 AACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTT 248829 ||| | ||| ||| || | | || |||| || |||||| ||| | ||||| Sbjct 10521509 AACAAGGACCGCCTCAACTCCTCCATCATTTACGACAGAGATTTCTCCTACAACTTCTTC 10521450 Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 | ||||| || |||||| || || || || || || | || || | | || ||| Sbjct 10521449 GGCTTCAAGACTCTGGAGCGTTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGA 10521390 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||||||| | ||| | ||| | || ||||| ||| | ||||| || || Sbjct 10521389 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 10521330 Query 248950 CTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTC 249009 ||||||| |||| | || || ||| | || || ||| | ||||| |||||| Sbjct 10521329 GTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTC 10521270 Query 249010 AACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||||||| ||| | |||||| | ||||| || || |||||| | |||||| Sbjct 10521269 AACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGAC 10521210 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || ||||| || || ||| ||| ||||| || | ||| ||| Sbjct 10521209 AGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGC 10521150 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| | | || | ||||||| ||| ||| |||||| ||| || || Sbjct 10521149 GGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATCGCAGGCACCAAC 10521090 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || | || || | || || | | |||||| ||| | | Sbjct 10521089 GGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTT 10521030 Query 249250 AACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 |||||| | ||| | | || ||| | |||||||||||| |||| |||||| Sbjct 10521029 GACCAGGGC-GGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGGAGCCATGGCACTT 10520971 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCG 249365 ||| | || || |||||||| |||| ||||||| || || ||| |||||| | Sbjct 10520970 CGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAG 10520911 Query 249366 TGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||| ||||||| | ||||| || | ||| |||||||| Sbjct 10520910 AGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATG 10520871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766056059200