Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_002747.1 Length=37667 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 8e-16 >seq18 Length=80077792 Score = 96.9 bits (106), Expect = 8e-16 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 6201 ACTCGTGACCCTGAACTTAGATATACACCACAGAACCAAGCAGTAGGCACATTTGGATTA 6260 || |||||| |||| | | ||||| ||| || |||||| | || ||| | Sbjct 59386128 ACCCGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGCGACTTTTACTCTT 59386069 Query 6261 GCTGTAAATCGTCAGTTTAAGAACGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGT 6320 || ||||| ||| |||||||| ||||| || || || ||||| || || ||| Sbjct 59386068 GCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTC 59386009 Query 6321 GTTATTTGGCGACAACAAGCCGAAAATTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATT 6380 || || ||||| ||||| || |||||| | || || | |||||||||||| || | || Sbjct 59386008 GTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATC 59385949 Query 6381 GGAATAACTGGACGAATTCAAACACGAAACTATGAGAACCAACAAGGACAA 6431 || || || || || || || || || | || || ||||| ||||||||| Sbjct 59385948 GGGATCACAGGCCGTATCCAGACTCGTAGTTACGATAACCAGCAAGGACAA 59385898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120412764252450