Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_003050.2 Length=40248 Score E Sequences producing significant alignments: (Bits) Value seq18 488 1e-133 >seq18 Length=80077792 Score = 488 bits (540), Expect = 1e-133 Identities = 624/854 (73%), Gaps = 7/854 (1%) Strand=Plus/Minus Query 38821 GTAAAAGCAGTAAAAGATTATCTTTTGCGTAAAGGCGGAGAGAAAGCGGTGATCATCGCT 38880 || || || || ||||| || ||| | ||||||||||| || | | | |||| Sbjct 30081804 GTTAAGGCGGTCAAAGACTACCTTGTCAAAAAAGGCGGAGAAAAGACTATCAAAATCGTC 30081745 Query 38881 GAAATTCTAGCTAAAAATGCAGTTCATGCCGTTGAGCAAGTAGCTTCAGAGACTGGCTAT 38940 ||||| | ||||| || |||||| |||| |||||||| || || | || |||||||| Sbjct 30081744 GAAATCTTGGCTAAGAACGCAGTTAATGCTGTTGAGCAGGTCGCAGCCGAAACTGGCTAC 30081685 Query 38941 AAGGGCGAAGAAAAGCTGGAGCAGGCTCGTGCTAAAGTCCGTGCTGAGCTTACAAAATAC 39000 || |||||||| || || || || || || ||||| | ||||| ||||| || |||||| Sbjct 30081684 AAAGGCGAAGAGAAACTTGAACAAGCACGCACTAAAATTCGTGCCGAGCTAACCAAATAC 30081625 Query 39001 AATATTAGTATGACTGACAAAGACTTAGACACCTTCGTAGAGTCAGCAGTGAAGCAGATG 39060 ||||| || ||||||||||| |||||||| || || || ||||||||||| ||||||||| Sbjct 30081624 AATATCAGCATGACTGACAATGACTTAGATACATTTGTCGAGTCAGCAGTTAAGCAGATG 30081565 Query 39061 AATGACGCATGGAAAGGACGATAGGGAATGGATATCGATAGAAACAGACTACGTACAGGC 39120 ||||| || |||||||||| || |||||||| || | || ||||||| | || | | Sbjct 30081564 AATGATGCGTGGAAAGGACAGTA-ATCATGGATATTGACACAAGCAGACTAAGGACTGAC 30081506 Query 39121 TTGCCACAGGTTGGGGTGCAGCCTTATCGACAAGTACATGCTCACTCAACAGGTAACCGC 39180 | || |||||||| | || || || ||||| | ||||| ||||||||||| || | Sbjct 30081505 CTTCCCCAGGTTGGAGAACAACCATACAGACAAATTCATGCGCACTCAACAGGAAATCCA 30081446 Query 39181 AACTCAACCGCTCAAAATGAAGCGGATTATCACTGGCGGAAAGACC--CAGAATTAGGTT 39238 || ||||||||||||||||||||||| || ||| ||| | |||| || | ||| | Sbjct 30081445 AATTCAACCGCTCAAAATGAAGCGGACTACCACATGCG--ACGACCTGTTGATTCAGGAT 30081388 Query 39239 TTTTCTCGCACGTTGTTGGGAACGGTCGCATCATGC-AAGTAGGTCCTGTGAACAACGGA 39297 |||||||||||||||| ||||| ||||| | |||| || ||| | | ||| ||| Sbjct 30081387 TTTTCTCGCACGTTGTCGGGAATGGTCGTGTGATGCAAACCTGGTACACAG-ACATGGGA 30081329 Query 39298 AGTTGGGATGTTGGGGGCGGTTGGAATGCTGAGAGTTATGCAGCGGTTGAACTGATTGAA 39357 || ||||| || || |||||||| | ||| | || | |||||| ||||||| Sbjct 30081328 GCTTATGATGTAGGCGGTGGTTGGAACGTTGAAGGATACGGTCAAGTTGAATTGATTGAG 30081269 Query 39358 AGCCATTCAACTAAGGAAGAGTTTATGGCTGACTATCGCCTCTATATCGAATTGCTACGC 39417 |||||| || ||||||||||| ||| ||| ||| |||||| | || | | ||| Sbjct 30081268 AGCCATGAGACCAAGGAAGAGTTCATGCGTGATTATAAGCTCTATGTTGAGCTTTTGCGC 30081209 Query 39418 AATCTAGCGGACGAAGCAGGCTTGCCGAAGACTCTTGATACAGACGACTTGGCAGGTATC 39477 || || || || |||||||| | || || || || || | ||| | | ||||| ||| Sbjct 30081208 AACCTCGCTGATGAAGCAGGGATTCCTAAAACGCTGGACTCTGACAGCCTAGCAGGAATC 30081149 Query 39478 AAGACGCATGAATACTGTACCAATAACCAACCAAACAACCACTCAGACCATGTGGATCCA 39537 ||||||||| |||| || || |||||||||| ||| |||| ||||| || ||||| Sbjct 30081148 AAGACGCATCAATATTGCACATATAACCAACCTCGAAACTACTCTGACCACGTTGATCCG 30081089 Query 39538 TATCCATATCTTGCAAGTTGGGGCATTAGCCGTGAACAGTTTAAGCAAGACATCGAAAAC 39597 ||||| |||||||||| |||||||| |||||||| |||||||| | || || ||| Sbjct 30081088 TATCCTTATCTTGCAAAATGGGGCATCAGCCGTGAGCAGTTTAAAAATGATATTGAAGGT 30081029 Query 39598 GGCTTGAGCGCTGCAACAGGCTGGCAGAAAAATGGCACTGGCTACTGGTACGTACACTCA 39657 || | ||| | | || |||| |||||| |||||||| |||| | | ||| Sbjct 30081028 GGTATCTCTACTGAAGCTGGATGGCGTCAAAATGCCACTGGCTGGTGGTGGGAGGAGTCA 30080969 Query 39658 GACGGCTTTTATCC 39671 || |||| |||||| Sbjct 30080968 GATGGCTCTTATCC 30080955 Score = 230 bits (254), Expect = 6e-56 Identities = 362/511 (71%), Gaps = 8/511 (2%) Strand=Plus/Plus Query 39088 ATGGATATCGATAGAAACAGACTACGTACAGGCTTGCCACAGGTTGGGGTGCAGCCTTAT 39147 ||||| | |||| || ||| |||| ||| | || || | || | ||| || ||| Sbjct 50176787 ATGGAAGTTGATAAAAGTAGATTACGAACAAATCTTCCTCAAATCGGTGAGCAACCCTAT 50176846 Query 39148 CGACAAGTACATGCTCACTCAACAGGTAACCGCAACTCAACCGCTCAAAATGAAGCGGAT 39207 |||||||| ||||||||||||||||| || | ||||| || || ||||||||||| ||| Sbjct 50176847 CGACAAGTTCATGCTCACTCAACAGGAAATCCTAACTCTACGGCACAAAATGAAGCAGAT 50176906 Query 39208 TATCACTGGCGGAAAGACCCA--GAATTAGGTTTTTTCTCGCACGTTGTTGGGAACGGTC 39265 || || ||| | || || | ||| |||||||| || || || ||||| |||| Sbjct 50176907 TACCATATGCGTC--GTCCAGTTGAGTCAGGATTTTTCTCCCATGTGGTAGGGAATGGTC 50176964 Query 39266 GCATCATGCAAG-TAGGTCCTGTGAACAACGGAAGTTGGGATGTTGGGGGCGGTTGGAAT 39324 | ||||||||| | ||| || | | || || |||||||| ||||| |||||| Sbjct 50176965 GTATCATGCAAACTTGGTTAGTAGACCGA-GGTGCTTATGATGTTGGCGGCGGATGGAAT 50177023 Query 39325 GCTGAGAGTTATGCAGCGGTTGAACTGATTGAAAGCCATTCAACTAAGGAAGAGTTTATG 39384 | ||| |||| || |||||||| || ||||| ||| | |||| ||||| || ||| Sbjct 50177024 GTTGAAGGTTACGCTCAAGTTGAACTAATAGAAAGTCATGAATCTAAAGAAGAATTCATG 50177083 Query 39385 GCTGACTATCGCCTCTATATCGAATTGCTACGCAATCTAGCGGACGAAGCAGGCTTGCCG 39444 || ||||| || ||| || | | |||| | |||| ||||| || || | || Sbjct 50177084 AGAGATTATCGACTTTATGTCAAGCTATTACGTGAGTTAGCTGACGAGGCTGGAATCCCT 50177143 Query 39445 AAGACTCTTGATAC-AGACGACTTGGCAGGTATCAAGACGCATGAATACTGTACCAATAA 39503 || ||||| ||| | || | |||| | || || || || ||| ||| ||||| | || Sbjct 50177144 AAAACTCTAGATTCTAGTAGTCTTG-CTGGGATTAAAACTCATCAATTTTGTACTTACAA 50177202 Query 39504 CCAACCAAACAACCACTCAGACCATGTGGATCCATATCCATATCTTGCAAGTTGGGGCAT 39563 ||||||||| || || ||||| ||||| |||||||| ||||||| |||||||| Sbjct 50177203 CCAACCAAATAATGGAAGTGATCATGTAGATCCCTATCCATACCTTGCAAAATGGGGCAT 50177262 Query 39564 TAGCCGTGAACAGTTTAAGCAAGACATCGAA 39594 ||| | |||||||||||| |||| || ||| Sbjct 50177263 TAGTAGAGAACAGTTTAAGAAAGATATTGAA 50177293 Score = 224 bits (248), Expect = 3e-54 Identities = 154/174 (89%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 12087 TTGAGGAGGTGGAGTGATGGAAGATGAGCAAAATATTTTAGAGACACAATTGATTTTAGG 12146 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 30104823 TTGAGGAGGTGGAGTGATGGCTAATGAGCAAAATATTTTAGAGACACAATTGATTTTAGG 30104764 Query 12147 TAAGCAAGTTTTAGAAATTGTATTGGATTTGCTAAAAGACGATTCAAAAATAGGGGTAGT 12206 |||||| |||||||||||||||| |||||||||||| |||| ||||||| ||||| ||| Sbjct 30104763 CAAGCAAATTTTAGAAATTGTATTTGATTTGCTAAAAAACGAATCAAAAACAGGGGCAGT 30104704 Query 12207 TCTACCTTTAAACATAAATGACCGTGAATTTACAATTACTGTAGAAAAGGAGGT 12260 | | || |||||||||||||| | |||||||||||| |||||||| ||||| Sbjct 30104703 TTTGCCCTTAAACATAAATGATTACGGATTTACAATTACAGTAGAAAAAGAGGT 30104650 Score = 196 bits (216), Expect = 1e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 12754 AGGAGGAGGATAAATAATGAACCCAGAAATAATTGACAATATAAACAAACCAAGCCACTA 12813 |||| ||||| | |||| | ||||||| ||||||||| |||||||||||||||| || Sbjct 30101714 AGGAAGAGGAAGATAAATGGAACCAGAAAAAATTGACAACGTAAACAAACCAAGCCATTA 30101655 Query 12814 CCAAGGTGCAAACGGTCTTGAGGCTATCGATGTTGTGCATAACTTCGTTGGGAGCCTTTC 12873 ||||| |||| |||||||| ||| || || | | ||||| |||| | || | Sbjct 30101654 TCAAGGATCAAAAGGTCTTGAAAGTATTGAAGTGATTGACAACTTTATTGGCAATCTGCC 30101595 Query 12874 CGGAGCGTCTGCTTTCTTTTGGGGCAACGCAATCAAGTATATGTTACGGTTTCAAAAGAA 12933 || | | || | | |||||||||||||||||||||||| | || || |||||||| Sbjct 30101594 AGGGAAGGCAGCGTGGTGCTGGGGCAACGCAATCAAGTATATGCTTCGTTTCCAAAAGAA 30101535 Query 12934 AAATGGTCTTGAAGACCTGAAGAAAGCTAGAAAGAATCTTGACTGGCTGATTGAGGAGAT 12993 |||||||||||| |||||||||||||| | ||||| ||||| ||| ||||||||||||| Sbjct 30101534 AAATGGTCTTGAGGACCTGAAGAAAGCACGCAAGAACCTTGATTGGTTGATTGAGGAGAT 30101475 Query 12994 GGA 12996 ||| Sbjct 30101474 GGA 30101472 Score = 190 bits (210), Expect = 5e-44 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6963 TACACGCAATCTAATATTGCGGTTGCTACGTTTACTCTTGCTGTAAACCGTCCATTTAAG 7022 || || | ||| ||| | || ||||| || ||||||||||| ||||||||| | |||||| Sbjct 59386107 TATACCCCATCAAATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAG 59386048 Query 7023 AACGAGGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTGGAGACAGTTAGCT 7082 | | ||| || ||||||||||||||||||||| ||| || ||| | || ||| Sbjct 59386047 AGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCT 59385988 Query 7083 GAAAATCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTACAGGAGTAATTCAA 7142 |||||||||||||| |||||||||||||||||||||||||| | ||||| || || Sbjct 59385987 GAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAG 59385928 Query 7143 ACACGTAGCTATGATAACCAGCAAGGTCAACGTGT 7177 || ||||| || |||||||||||||| |||||||| Sbjct 59385927 ACTCGTAGTTACGATAACCAGCAAGGACAACGTGT 59385893 Score = 181 bits (200), Expect = 3e-41 Identities = 264/370 (71%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 38332 ATGAAAATTGAATTTTTCAATTTTCTAAGAAGTGTCATACAGACTGAAGATGGTTTGGTC 38391 ||| | |||||||| || |||||| |||||| |||| | || |||||||| | | Sbjct 50176369 ATGGATATTGAATTGTTTAATTTTTTAAGAAAGCTCATCGAAACAGAAGATGGGCTTATT 50176428 Query 38392 TTGTACGCTCTAGCACTGATTGTCTCAATGGAAATCATTGATTTTGTCACAGGGACGATT 38451 ||||| || |||| | |||||| |||||||| ||||||||| |||| || || Sbjct 50176429 TTGTATGCGTTAGCGTTAATTGTCATCATGGAAATTGTTGATTTTGCATCAGGAACATTT 50176488 Query 38452 GCGGCGATTATCAATCCTGACATCGAGTACAAAAGCAAAATCGGCATTAACGGGCTCCTT 38511 ||||| ||| | |||||||| | ||||| || || | ||| || || || || | || Sbjct 50176489 GCGGCCATTGTAAATCCTGATGTTGAGTATAAGAGTAGAATTGGAATCAATGGATTAATT 50176548 Query 38512 CGTAAGATTTCAGGGGTTCTC---TTACTGATGATCCTCATTCCGGCGTCCGTTTTGTTG 38568 || || | | |||| || | |||||| | || | |||||| ||| ||||||||| Sbjct 50176549 CGAAAAGTCTTAGGGATTTTTATGTTACTGTT-AT--TGATTCCGATGTCTGTTTTGTTG 50176605 Query 38569 CCTGAAAAGACAGGTTTTGCATTCTTGTACTCAATCTGTCTCGGGTACATCGCATTTACT 38628 |||||||| || || ||| || |||| || || | | |||| ||| | | ||||||| Sbjct 50176606 CCTGAAAAAACTGGGTTTATGTTTCTGTATTCTATTTATATCGGATACCTAGTATTTACT 50176665 Query 38629 TTTCAATCTCTCATTGAAAATTACCGCAAATTAAAAGGAAATGTTACTCTTTTTCAGCCG 38688 || ||||| || ||||| || || | ||| ||||||| ||| || |||||| | || Sbjct 50176666 TTCCAATCGCTAATTGAGAACTATCAAAAAGTAAAAGGGAATATTCTACTTTTTAAACCA 50176725 Query 38689 ATTGTAAAAG 38698 ||| |||||| Sbjct 50176726 ATTTTAAAAG 50176735 Score = 107 bits (118), Expect = 5e-19 Identities = 101/124 (81%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 1228 CATTGATTTT-ACCTCACTTTTTTGATAAAATGGGTACAAGAAAACTACCTTTTTAATGG 1286 |||||||||| |||||| ||| ||||||||||||||| || ||| | ||||||||||||| Sbjct 30117705 CATTGATTTTTACCTCA-TTTCTTGATAAAATGGGTATAAAAAAGCGACCTTTTTAATGG 30117647 Query 1287 TTGTTTCCTATACATGATTTCCTCACACTC--TCCTTGGCCAAAATTTGAGTGTGGGGAT 1344 ||||||| ||||| ||| |||||| |||| ||||| || |||||||||||| Sbjct 30117646 TTGTTTCTTATACTGGATATCCTCATACTCAAATTTTGGC--GAAGGCGAGTGTGGGGAT 30117589 Query 1345 TTTT 1348 |||| Sbjct 30117588 TTTT 30117585 Score = 104 bits (114), Expect = 6e-18 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7882 TTGGATGAACTGGGGTATGATGTGGAATGGCAAGTGCTTAACAGCAAAAATTTTGGAGTC 7941 ||||||||| ||||| || | |||||||||||||| ||| ||| ||| ||||| Sbjct 66850121 TTGGATGAATCAGGGTACGACCTTGAATGGCAAGTGCTCAACTCAAAAGATTACGGAGTA 66850062 Query 7942 CCCCAAAATCGGGAACGTGTGTTCATTATCGGACATCTTAGAGGAGGAAGTGGACGAAAG 8001 || |||||| | ||||| | | | |||||||||||||||| || | || ||||||| Sbjct 66850061 CCACAAAATAGAGAACGCATCTATACTATCGGACATCTTAGAAGAAAAGGTCGACGAAAA 66850002 Query 8002 GTATTTCCTCTCAGCGGAGA 8021 ||| | ||||||||| |||| Sbjct 66850001 GTACTACCTCTCAGCAGAGA 66849982 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11745 AAAGAACTAGAAGACGCAAACTTCGGCTGGGTGTTTGATTGTGAAGGAATTGAGATTGAG 11804 |||||||||||| | || ||||| | ||||||||||||||| |||| |||| ||||| Sbjct 30104878 AAAGAACTAGAACAAGCCAACTTTGACTGGGTGTTTGATTGCCCAGGAGTTGAAGTTGAG 30104819 Query 11805 GAGGTGGAGTGATG 11818 |||||||||||||| Sbjct 30104818 GAGGTGGAGTGATG 30104805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128671961800500