Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25 437 8e-118 seq13 127 2e-24 >seq25 Length=32766887 Score = 437 bits (484), Expect = 8e-118 Identities = 1053/1583 (67%), Gaps = 31/1583 (2%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||||| ||| ||||| ||| || | | || || ||| |||||||||| ||| Sbjct 10519887 CTGGATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10519946 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||| |||| || ||| |||| || | || ||||| ||||||| || | Sbjct 10519947 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 10520006 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| ||| |||| || || ||||| ||||| ||||| || Sbjct 10520007 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10520066 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || ||||| ||||||| ||| || ||| |||| |||||| || || Sbjct 10520067 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10520126 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | ||||||||| || |||| ||||||| || |||||||| || Sbjct 10520127 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTC---TTCTCCCACATGTC 10520183 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATATA 22724 ||| || | | ||| || | ||||| ||| |||||||| ||||| || || | Sbjct 10520184 GTACTGGAGGATGCCCTTGCT-GACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCG-AGC 10520241 Query 22725 TC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTC 22783 || ||||| || |||||||| ||||||| ||| ||| || || |||||||| || | Sbjct 10520242 TCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGG 10520301 Query 22784 TTGTT---CAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCG 22840 |||| || | || ||| ||| ||||| | || ||||||| | ||| ||| Sbjct 10520302 ATGTTGAGCAGCTGAGCTTCGG-GAC--TTTCGAAAGGGTGCCGCATCAGGATGAAGGCG 10520358 Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCC 22900 || |||| |||||| ||||| || |||||||| | || | || || | || Sbjct 10520359 TCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCT 10520418 Query 22901 TCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT--- 22957 ||||| | || || | || ||||| | |||| | |||| | ||| ||| Sbjct 10520419 TCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTT---CACGATTACC 10520475 Query 22958 TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTG 23017 || || | | |||||| || | | | | || || ||||| Sbjct 10520476 TTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG 10520535 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | |||||| ||||| || ||||| |||||||||||||| ||| |||||||| || | Sbjct 10520536 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACC 10520595 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 || || || || ||||| ||||| || ||||||| || ||||||||| || | ||| Sbjct 10520596 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTG 10520655 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | ||||||||||||||||| || || || || ||| ||| ||||||||||| || Sbjct 10520656 CAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCG 10520715 Query 23198 CGCCACATAGTCTGAGCGTGAACACGTCGCACGT-AC-CTGCCTTCTTCCTCGTACTTTT 23255 ||| | ||| || | ||| | | | || || ||||| | ||| || || Sbjct 10520716 TACCAGAGCTGCTGCGCCTT--CACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGG 10520773 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | | || || || | || | || ||| |||| || || | | | |||| Sbjct 10520774 TGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGAC 10520833 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||| | ||| || | || || | |||| || || || || ||||| | Sbjct 10520834 ACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACA 10520893 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 |||||||| || || | ||| | | |||||| || || |||||||| |||| |||| Sbjct 10520894 AGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCA 10520953 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| |||||||| ||||| ||||| || || | ||| || || || ||||||| Sbjct 10520954 GGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCT 10521013 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||||| | Sbjct 10521014 TGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCA 10521073 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT----TTGCTCGAACGTTG 23611 |||||||| |||| ||| || | | | ||| | | ||| | | | Sbjct 10521074 ACCCGTTGGAGTTGCCGTTGGTGCCTGCGA----TGTAGCTTCCCGTCGATCGGATGCAG 10521129 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || | || || || || | || || || || | |||||| || ||||| ||| Sbjct 10521130 CTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTG 10521189 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 ||||||||||| ||||||||||| || || | |||| || ||| || |||| ||| Sbjct 10521190 TCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGC 10521249 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | | || |||| ||| || ||||| |||||| || || | | |||| Sbjct 10521250 GGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGAC 10521309 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 | || ||||| || |||| |||||| || ||||| ||||| || || | | || Sbjct 10521310 AGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACC 10521369 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 | ||| | ||||| || |||| |||| || ||||| || || | ||| || ||| Sbjct 10521370 CTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAA 10521429 Query 23912 CGTTGCATCGTTTTAAATCCAAA 23934 || | || || || || || || Sbjct 10521430 CGCTCCAGAGTCTTGAAGCCGAA 10521452 >seq13 Length=27080333 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||| || ||||| || || || |||||||| |||| || || Sbjct 15278716 CACCTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGT 15278775 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 15278776 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 15278835 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 15278836 ACCCGTCTCTGTCTGCGACTCGATGATGGC 15278865 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 15279183 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 15279242 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 15279243 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 15279302 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 15279303 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 15279338 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || |||||||| |||||| | || || ||||| | Sbjct 11060746 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 11060687 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| ||| | || || |||||| Sbjct 11060686 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 11060627 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| ||||||| || || ||| || ||| Sbjct 11060626 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 11060567 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || || || || | |||||||| || Sbjct 11060566 ATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 11060520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766260698000