Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq25 434 1e-116 seq22 93.3 5e-14 >seq25 Length=32766887 Score = 434 bits (480), Expect = 1e-116 Identities = 1273/1950 (65%), Gaps = 35/1950 (2%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || ||||| | | ||| || | | | | ||||| || ||||| Sbjct 10519918 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10519977 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||| ||||| |||| || || || ||||| || || ||||| |||| || Sbjct 10519978 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10520037 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 10520038 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 10520097 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | | | ||| || || || || | | ||| | |||||| Sbjct 10520098 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10520157 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | ||| | | ||| || || || || || || ||| || Sbjct 10520158 TCGGTCGGCGTCTTCTCCCACATGTCG-------TACTGGAGGATGCCCTTGCTGACGGG 10520210 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| || | || || || || || || || | || || | || || ||||| | Sbjct 10520211 CGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAG 10520270 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || ||| || ||||| || || |||| | || || || ||||| || || || Sbjct 10520271 GGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTC 10520330 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 || || | | || || || ||||| || | || || || || || ||||| || Sbjct 10520331 GAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGG 10520390 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| || || | || ||||| |||| || || || || || || || || Sbjct 10520391 CCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGAT 10520450 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCG 62917 || ||||| ||| | || ||||| ||| || ||| || || || || Sbjct 10520451 CTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGT 10520510 Query 62918 CCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 || ||| | || ||||||| | || | || ||||| || || ||||| ||||| Sbjct 10520511 CCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTC 10520570 Query 62975 ATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 | | | | | || | | | ||| ||||| || || || |||||||| || || Sbjct 10520571 GTC--CTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 10520628 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | || || || || ||||| |||| || || ||||| || || ||| | || || || Sbjct 10520629 AGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCG 10520688 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 63151 ||||| |||| || || || || || | ||||| | || | ||||| | | ||| Sbjct 10520689 GTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCT-GCGCCTTCACCACCCTTTT 10520747 Query 63152 GTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211 ||||| ||| | || ||| || || | |||||||| |||||||| | Sbjct 10520748 CACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTC 10520807 Query 63212 GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 ||||| | |||||| || ||||||||||| ||||| || || || ||||| Sbjct 10520808 GTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCT 10520867 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCT 63330 ||||| || || ||||| ||||| | || || ||| || ||||| | ||| || |||| Sbjct 10520868 CTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCT 10520926 Query 63331 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 63390 | |||||||| ||||| || || || ||||| | | | || | ||||| || |||| Sbjct 10520927 CCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCA 10520986 Query 63391 AGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 63450 || ||||| | | || || | ||||| || ||||| || | ||| | |||||||| Sbjct 10520987 GATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGT 10521046 Query 63451 TATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT 63510 | || |||||||||| ||| || | | ||||| || | || ||||| || | ||| | Sbjct 10521047 TGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGT 10521106 Query 63511 AGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 ||| ||| | | || || || | | | || || || || || || || | Sbjct 10521107 AGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAA 10521166 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | | ||||| | || | ||||| ||||||||||| ||||| || || ||||| | Sbjct 10521167 TGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGA 10521226 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 | || || || || |||| || | || | || || || || || | ||| ||||| | Sbjct 10521227 GCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGG 10521286 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 |||| || ||||| || || || || || ||||| ||||| | || | ||| || || | Sbjct 10521287 CGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTC 10521346 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 || || || || | || | ||| | ||||||||| |||| || | | ||| Sbjct 10521347 GCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCC 10521406 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 ||| || |||| || |||||| |||| ||| || || || || ||||||| || | Sbjct 10521407 CGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGA 10521466 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCA 63930 | |||| |||||||| || || ||||| ||||| | || | || || || | Sbjct 10521467 AATCTCTGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGA 10521526 Query 63931 TGGTAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTAACATAGTTG 63986 || | ||| || || || ||||| | |||| || ||| || |||||| | Sbjct 10521527 GCGT-CTGCTTGGAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCG 10521582 Query 63987 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATG 64046 || | ||||||||||| || || || | || || || ||||| || || || || | | Sbjct 10521583 AACAGGTCCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACG 10521642 Query 64047 GCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATT 64106 || || || ||||| || ||||| || || || |||| || || ||||| || || Sbjct 10521643 GCAATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATC 10521702 Query 64107 TCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACC 64166 || ||||| || ||||| | || || || || || || | || | || || || ||| Sbjct 10521703 TCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACC 10521762 Query 64167 TTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCT- 64225 ||||| | || | | ||||| | | |||| ||| | ||| ||||| || |||| Sbjct 10521763 TTCATGGTGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTG 10521821 Query 64226 AATACGAGACGTGATTTTATCAAACATGAC 64255 || || || |||||||||||||||||||| Sbjct 10521822 GATGCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 >seq22 Length=23629796 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 3940981 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3940922 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| ||||| || || || ||||||||||| || || || || |||| Sbjct 3940921 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3940862 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 3940861 CCACCACTCTCTCTCC 3940846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817403182000