Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq25 419 3e-112 >seq25 Length=32766887 Score = 419 bits (464), Expect = 3e-112 Identities = 1288/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| |||||||| | || || | | | ||||| ||||| || ||||| | | Sbjct 10519887 CTGGATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10519946 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 10519947 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 10520006 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10520007 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10520066 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | | | ||| Sbjct 10520067 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10520126 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | |||||| || | ||| | | Sbjct 10520127 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 10520184 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || || ||| || ||| || | || || ||||| || || || Sbjct 10520185 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10520244 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 10520245 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATG 10520304 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || ||||| | || || || || | | || || || ||||| || Sbjct 10520305 TTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10520364 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | || || || || || ||||| || || || | ||| || || | || ||||| ||| Sbjct 10520365 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGA 10520424 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 10520425 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 10520484 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 ||| || || || || ||||| | || ||||||| | || | Sbjct 10520485 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 10520544 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 65799 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 10520545 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || ||||||||||| || | || || || || ||||| |||| || || | Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10520722 Query 65920 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 65976 | || | ||||| | | ||| |||| ||| | || ||| ||||| | Sbjct 10520723 GCTGCT-GCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10520781 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || |||||||| |||||||| | ||||| |||||||| || |||||||||| Sbjct 10520782 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10520839 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGCT 66095 | ||||| || || || ||||| ||||| || || ||||| ||||| ||| | Sbjct 10520840 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 10520899 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 | ||| | ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 10520900 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 10520958 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 10520959 TCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG 10521018 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10521019 CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10521078 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| | || ||||| || | ||| |||||||| | | || || || | | Sbjct 10521079 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 10521138 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | || || || || || || || || | ||||| | || | || || |||||| Sbjct 10521139 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 10521198 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || || || ||| ||||| || || || || || |||| || | || | Sbjct 10521199 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 10521258 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 10521259 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 10521318 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||| | || | ||| || || | || || || || | || | ||| | | Sbjct 10521319 TAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 10521378 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||| |||| || | | || ||| || |||| || |||||| |||| | Sbjct 10521379 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 10521438 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || || || || ||||||| || || |||| |||||||| || |||||||| Sbjct 10521439 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAGG 10521498 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---G 66751 ||||| | || | || | || | || | ||| || || || ||||| | | Sbjct 10521499 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTGGCG 10521557 Query 66752 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 ||| || ||| ||||||||| ||| | ||||||||||| || || || | || Sbjct 10521558 TTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCTT 10521614 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || || || || || || || ||||| || || ||||| | ||||| || || || Sbjct 10521615 CTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 10521674 Query 66872 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 66931 |||| || || ||||| || || || ||||| || ||||| | || || || || Sbjct 10521675 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGT 10521734 Query 66932 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 66991 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 10521735 GACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 10521794 Query 66992 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 | ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 10521795 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172594321000