Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_004066.1 Length=36798 Score E Sequences producing significant alignments: (Bits) Value seq18 102 2e-17 >seq18 Length=80077792 Score = 102 bits (112), Expect = 2e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 503 TAAAAATCAATATAATCGGAAAATTGTTGCCCTATTTTATCTTTAGCAAATTTAGTGATA 562 || ||||||||||||| | ||| | | || || | || || || | | ||||| Sbjct 30118784 TAGAAATCAATATAATTCGCAAAGCGCTCTCCAATATCGTCCTTGGCTTGTGTGGTGATG 30118725 Query 563 TGAGTATAAATGTTCATTGTTGTTTTTAAATCTGCATGCCCTAGGCGATATTGAACTTGT 622 |||||||||| |||||| || ||||| | |||| ||||| || | ||| || |||||| Sbjct 30118724 TGAGTATAAACGTTCATGGTCGTTTTAAGGTCTGAGTGCCCAAGTCTATACTGGACTTGT 30118665 Query 623 TTTAAACTCATGCCTGATTCAAAAAGCAAGCTTGCGTGAGTATGTCTAAATGCATGAATT 682 || || ||||||||| |||||| | ||| || || ||||| || ||| | || ||| Sbjct 30118664 TTCAAGGTCATGCCTGCATCAAAACATAGGCTGGCATGTGTATGCCTGAATCCGTGGATT 30118605 Query 683 CTGATTGGT 691 | |||||| Sbjct 30118604 TTAATTGGT 30118596 Score = 98.7 bits (108), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 8338 TATACACCACAAAATAAAGCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAA 8397 ||||| ||| |||| ||||||||| ||||||||||||||||| || || | ||||| Sbjct 59386107 TATACCCCATCAAATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAG 59386048 Query 8398 AACGCTAATGGAGAAAGAGAAGCTGACTTTATCAGTTGTGTTATTTGGGGTAAATCAGCC 8457 | ||||| ||| | || ||||| ||||||| | || || ||| || || || Sbjct 59386047 AGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCT 59385988 Query 8458 GAAAACTTGGCCAATTGGACTCATAAAGG-TCAATTAATTGGAGTTATTGGGAATATCCA 8516 ||||| | || || ||| || | ||||| || || || || | | || |||||| Sbjct 59385987 GAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTT-ATCGGGATCACAGGCCGTATCCA 59385929 Query 8517 GACTCGAAACTATGAGAACCAACAAGGGCAGCGTGT 8552 |||||| | || || ||||| ||||| || ||||| Sbjct 59385928 GACTCGTAGTTACGATAACCAGCAAGGACAACGTGT 59385893 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/169 (75%), Gaps = 11/169 (7%) Strand=Plus/Minus Query 1463 GCTTTGGTTTTAAAGCCACTTTTTTCAG-CGTACTGGCTTTTACCGTTCTTTTTTCCAAT 1521 ||||| |||| ||| || |||||||| | |||| | || |||||||||||||| |||| Sbjct 30117821 GCTTTAGTTTCAAACCC-CTTTTTTCTGGCGTATTTACTCTTACCGTTCTTTTTGCCAAG 30117763 Query 1522 ATATGCTTTGAACTTATAAGCAGTAGTGCCAtttttctttttatatgcttttatttccaa 1581 || || | || ||||| ||| || ||||||||||| || | | |||| || Sbjct 30117762 GTAGACTGTAAATCCGTAAGCTGTATCTCCGTTTTTCTTTTTGTAAGACTCAATTTTCA- 30117704 Query 1582 agttgctttttatACCTCATTTC-TGATAAAAT-GGTATAGTAAAAAGC 1628 ||| |||| ||||||||||| ||||||||| |||||| ||||||| Sbjct 30117703 --TTGATTTT--TACCTCATTTCTTGATAAAATGGGTATA--AAAAAGC 30117661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117631965078000