Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq25 416 4e-111 seq13 116 5e-21 seq22 87.8 2e-12 >seq25 Length=32766887 Score = 416 bits (460), Expect = 4e-111 Identities = 1290/1979 (65%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| |||||||| | || || | | | || || ||||| || ||||| | | Sbjct 10519887 CTGGATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10519946 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | | ||||| ||||| || || | || || ||||| |||| || || Sbjct 10519947 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 10520006 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10520007 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10520066 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| | ||| Sbjct 10520067 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10520126 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | |||||| || | || Sbjct 10520127 CTTTTCCTTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 10520185 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || || || || | || || ||||| || || | | Sbjct 10520186 ACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 10520245 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || || ||||| | || | | || ||||| ||||| |||| | | Sbjct 10520246 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGT 10520305 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || ||||| || || || || || | | || || || ||||| || | Sbjct 10520306 TGAGCAGCTGAGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 10520365 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || ||||| || ||||| | ||| || ||| | || ||||| |||| Sbjct 10520366 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAA 10520425 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 10520426 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 10520485 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || ||| ||| | || ||| ||| | ||| | | Sbjct 10520486 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 10520545 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||| | | || || || | | | || ||||| Sbjct 10520546 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT--GGTGTACTCCACCACCTCCGTGCA 10520603 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || ||||||||||| || | || || || || ||||| |||| || || || Sbjct 10520604 GAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTC 10520663 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || || ||||| |||| || || || || || | ||||| Sbjct 10520664 CTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 10520723 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || | ||||| | | | || |||| ||| | || |||| ||||| | Sbjct 10520724 CTGCT-GCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 10520782 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| |||||||| ||| | ||| | |||||||| || | |||||||||| Sbjct 10520783 TC--TCGAACTCCTCTCCCCA-GCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10520839 Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056 | ||||| || | | || | |||| ||||| || || ||||| ||||| | || Sbjct 10520840 AGGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10520898 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 10520899 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 10520957 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 10520958 GTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTT 10521017 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10521018 GCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCC 10521077 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| || ||||| || | ||| |||||||| | | || || ||| | | Sbjct 10521078 GTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 10521137 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || || || || | ||||| | || | || || ||||| Sbjct 10521138 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGAT 10521197 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || ||| ||||| || || || || || |||| || | || | Sbjct 10521198 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTT 10521257 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 10521258 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 10521317 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| | || | || || || | || || || |||| || | ||| | Sbjct 10521318 GTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAG 10521377 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || | | || || || |||| || |||||| |||| Sbjct 10521378 CATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAG 10521437 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || ||||||| || || |||| |||||||| || || ||||| Sbjct 10521438 AGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAG 10521497 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTT 72715 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 10521498 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGTC-TGCTTGGAGATCATGGGAGAGTGG- 10521555 Query 72716 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 | || || ||| || |||||| ||| | ||||||||||| || || || | | Sbjct 10521556 --CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCT 10521613 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | || || ||||| || || || || ||||| || || ||||| || ||||| || || | Sbjct 10521614 TCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 10521673 Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTG 72892 | |||| || || ||||| || || || ||||| || ||||| | || || || | Sbjct 10521674 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGG 10521733 Query 72893 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 72952 | || || | || | || || || |||||||| | || | | ||||| | | | Sbjct 10521734 TGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGT 10521793 Query 72953 CAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||| | ||| || || || |||| || || || ||||||||||||||||| || Sbjct 10521794 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||| | || ||||| || || ||||| ||| | || || || ||||| || | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 >seq13 Length=27080333 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||| ||||| ||||| || || |||||| ||| | || || || |||||||||| Sbjct 15275870 TCCATCCATAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCAATGTGAATAT 15275929 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 15275930 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACAGTTT 15275989 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 15275990 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 15276038 >seq22 Length=23629796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 3940981 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3940922 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| ||||||||||| || || || || |||| Sbjct 3940921 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3940862 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 3940861 CCACCACTCTCTCTCC 3940846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138990269000