Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_004303.1 Length=43075 Score E Sequences producing significant alignments: (Bits) Value seq18 459 7e-125 >seq18 Length=80077792 Score = 459 bits (508), Expect = 7e-125 Identities = 1017/1501 (68%), Gaps = 41/1501 (3%) Strand=Plus/Minus Query 13835 ATTGGGCTAAATCAACGACAAAAGCTATTTGTTAGCGAGTATATCAAGCTTGGAAATGGA 13894 |||||| |||||||| |||||||| | |||| ||||||||| | | | || |||| Sbjct 30100567 ATTGGGTTAAATCAAAGACAAAAGATGTTTGCGAGCGAGTATTTGAGGACAGGCAATGTC 30100508 Query 13895 ACTCAAGCAGCTATCAATGCTGGCTATAGTCCGAAAACTTCTGGAGCGCAA--GCTGAga 13952 |||| | || || ||| || |||||| || | | || ||| ||| | Sbjct 30100507 TATCAATCTGCAATATTTGCCGGTTATAGT--GAGGCTTACGCCAGAACAACCGCTAGTA 30100450 Query 13953 aattgctgaaaaaagttgaaataaaaaactccataaacgcagaaattgaaaaaatGCACA 14012 |||| || |||| | || |||| | |||| | |||||| |||| |||||| Sbjct 30100449 AATTACTAGAAAATGCAAGCATTAAAACGTTCATACAAACAGAAACCAAAAAGATGCACG 30100390 Query 14013 ACGAGAACATCATGGACGCCAAGGAAGCCTTATCCATTTTATCCGATATTGCAAGGGGAA 14072 | |||||||| || ||||| || ||| | || ||| | || || |||||||| |||| Sbjct 30100389 ATGAGAACATTTTGAGTGCCAAAGAGGCCCTTTCAATTCTTTCAGACATTGCAAGAGGAA 30100330 Query 14073 AGCGTGATGAAGAAATAGTCATGATGAACCCAGTTAGTGGCGAAGTGGAGCGTGTCACAA 14132 |||| ||||||| | | |||||||| || || | ||| || ||||| | || || | Sbjct 30100329 AGCGACTTGAAGAAGTTTTGATGATGAATCCGGTAACTGGTGAGGTGGACAGAGTTACGA 30100270 Query 14133 AGAAAGCTGATAATAACACCGTTATCAAGGCTATCACCGAAATTCTGAAACGCTATCCAA 14192 | || || ||||||||||| |||||||| || || | ||||| ||||||| ||||| | Sbjct 30100269 AAAAGGCGGATAATAACACAGTTATCAAAGCGATAGCTGAAATATTGAAACGATATCCGA 30100210 Query 14193 CAACTAAACAAGCCGAGAAGTTACAGCTTGAAATAGAAAAACTCAAGTCTCAAATTGGTG 14252 | |||||||||| || || | ||||||||||||| ||||| || |||||||||||| Sbjct 30100209 CTGCTAAACAAGCTGAAAAACTTGAGCTTGAAATAGAGAAACTTAAATCTCAAATTGGTA 30100150 Query 14253 GCAATGAAGGACAAGATGAGAAAATCGCTG-GCTTCCTAAACCTTATCAAAGGAGCTGTA 14311 |||| | || || || || | | | | || |||| ||| | | ||| ||| | Sbjct 30100149 TGGATGACGAGCATGACGATAAGCTTGTAGAGTTTGCTAAGGCTT-TGAGAGGTGCTTTT 30100091 Query 14312 AGCGATGGACTTGAGTAAGCTCTATACTAAACGGCAGTTAGAAGTGCTTA-ACTACATTT 14370 | ||| || |||||| || | || ||| || | |||| |||| || | ||| Sbjct 30100090 A---ATG-ACA--AGTAAGTTC-ACACCAAAA--CAAGAACAAGTCCTTAGACGAGTTTT 30100040 Query 14371 GGAATCATGATTGGTTTATCTGCGGTCTTCACGGTGCCAAACGAGCAGGTAAGACCGTTG 14430 || |||| | ||||| |||||| | || ||||| || || |||||||||| ||| Sbjct 30100039 A-AACGATGACTTCTTTATTTGCGGTTTGCATGGTGCAAAGCGTTCAGGTAAGACTGTTT 30099981 Query 14431 TTAACAATGATACGTTTGTCACTGAATTAAGCCGT----GTAAGAAAGATTGCTGACCGT 14486 | || ||| | | | || |||||| || | || |||| || ||||| Sbjct 30099980 TGAATAAT---ATGGTCTTC-CTGAATGAAATTGATAGAGTTAGAACAATAGCTGATAAG 30099925 Query 14487 ATGGCTATAGATGAGCCTATTTACATTTTGGCAGGTACGTCTTCAACAGCAATTCAGAAT 14546 | | || ||||| || || || |||||||| || ||||||||||| | || || ||| Sbjct 30099924 TTAGACATTGATGAACCGATGTATATTTTGGCTGGGACGTCTTCAACTTCGATACAAAAT 30099865 Query 14547 AACGTCTTACAAGAACTTTATAACAAGTATGGCTTTGAACCAAAATACGATAAACATGGC 14606 || | | |||||||| ||||||| || || |||| |||||||| || ||||| || Sbjct 30099864 AATATTATCCAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGACAAACACGGA 30099805 Query 14607 TCTTTCGTTTTCTGTGGTGTCAAAGTCGTGCAAGTTTATACTGGCTCAATAAGTGGCCTT 14666 | || | | || || ||||| || | |||||||||||||| ||||| || | Sbjct 30099804 GCGTTTACTCTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAATTTCAGGTTTA 30099745 Query 14667 AAGCGTGCACGTGGTTTCACAGCCTTTGGAGCTTACGTTAACGAAGCATCTTTAGCAAAT 14726 || || || |||||||||||||| |||||||| || || ||||| ||||| || || ||| Sbjct 30099744 AAACGAGCTCGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAAT 30099685 Query 14727 GAGCTTGTTTTCAAAGAGATTATCTCACGCTGTTCTGGTGATGGTGCTCGTGTTGTGTGG 14786 || | || |||||||| || |||||||| ||||| || || ||||| || |||| ||| Sbjct 30099684 GAACAAGTGTTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGG 30099625 Query 14787 GATAGCAACCCTGACAATCCGAATCATTGGCTTAACCGAGATTATATCGGTAAGAACGAC 14846 ||||| ||||| |||| |||| || ||||| | || ||||||||| |||| Sbjct 30099624 GATAGTAACCCAGACATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGAC 30099565 Query 14847 GGAAAGATTATAGATTTTAGTTTCAAGCTAGATGATAATACGTTCTTATCGAAACGCTAT 14906 | | ||| ||||| ||| ||||||||||||||||||||| ||| | || | | || Sbjct 30099564 GATATGATCATAGACTTTCATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATAC 30099505 Query 14907 ATCGATTCTATCAAGGCAGCAACCCCAAAAGGTAAATTCTACGATAGAGATATTCTAGGG 14966 ||| ||||||| || || ||| ||| ||| || || |||| || || || Sbjct 30099504 CGCGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGGT 30099445 Query 14967 CTCTGGACAGTAGCAGAGGGAGCTATCTATGCTGATTATGACAGCAAGATACACG-TAGT 15025 | ||| | | ||||| | | | ||| ||||| | ||| ||| | | | | || Sbjct 30099444 TTGTGGGCGACTGGTGAGGGCGTTGTATATCGTGATTTT---AGCGAGA-ATATGTTTGT 30099389 Query 15026 TGATGAATTGCCAGAA-ATGAAACGCTA--TTTTGGGGGTATTGACTGGGGATATACTCA 15082 ||| | | |||||| || ||| | | || ||| |||||||||| ||| || Sbjct 30099388 GGATAACGTACCAGAAGATATAACTAAAGTCTATGCTGGTGTTGACTGGGGGTATGAACA 30099329 Query 15083 CTACGGATCTATCGTGATTGTTGGTGAAGGAGTAGATAAT--AACTTCTATCTTGTCGAT 15140 || || ||||| || |||| || ||| ||| | | || ||||| | || Sbjct 30099328 CTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTTTATATCT--TAGAG 30099271 Query 15141 GGCGTAGCAGCACAATTCAAAGAGATTGACTGGTGGGTAGAGCAAGC--AAGGAAGCTTA 15198 | || |||| |||||||||||||| |||||||| | || ||| || | | Sbjct 30099270 GAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGAAATCAAA 30099211 Query 15199 CTGGCATCTATGGTAACATTCCGTTTTATGCTGATAGTGCCCGCCCAGAACACGTAGCAA 15258 | ||||| || ||| |||||| || ||||| || || || |||||||| || | Sbjct 30099210 AAACGA--TATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAACACGTTGCTA 30099153 Query 15259 GATTTGAAAACGAAGGGTTTGATATTATGAACGCTAACAAATCTGTGATAGCTGGTATCG 15318 ||||| | | || | | | | |||||||||||| | || | ||||||||| Sbjct 30099152 GATTTCAGAGAGAGCAACTGAAGACATTTAACGCTAACAAAGCGGTCTTGTCTGGTATCG 30099093 Query 15319 A 15319 | Sbjct 30099092 A 30099092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137718359114850