Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_004996.1 Length=34692 Score E Sequences producing significant alignments: (Bits) Value seq18 1838 0.0 >seq18 Length=80077792 Score = 1838 bits (2038), Expect = 0.0 Identities = 1749/2238 (78%), Gaps = 19/2238 (1%) Strand=Plus/Minus Query 29865 AAAGCGAACCTCATTGACTTTCAACGCGTTCAAGAGAAATCAAACCTCTACGAGCGAATT 29924 || || ||| | |||| ||||| || || ||||||| || | |||||||| ||| Sbjct 30084906 AAGGCTAACTTGCTTGATTTTCAGCGAGTGCAAGAGACTAGTAAGTTGTACGAGCGTATT 30084847 Query 29925 ATTGGTAGTAGTGAGTCCGATATCGCTGAGAAGGTTGCTCGCATGACTCTGACTAATCAA 29984 ||||| ||||| ||||| || || ||||||||||| ||||||||||| |||||||||||| Sbjct 30084846 ATTGGCAGTAGCGAGTCTGACATTGCTGAGAAGGTCGCTCGCATGACCCTGACTAATCAA 30084787 Query 29985 CTTTTTCAAGTCGAAGTTGGCAAATATTCAGCTGTTGGCGGTCCGAATGTTCTCCGAAAT 30044 ||||||||||| ||||| ||||||||| | ||||| ||||||||| | ||||||||| Sbjct 30084786 CTTTTTCAAGTTGAAGTCGGCAAATATGCCAACGTTGGTGGTCCGAATATGCTCCGAAAT 30084727 Query 30045 TCGAGAGCGGATGACGGATTGAAATACTGGTCTGAAGCGAATGGTCGTTTGAATTTTACA 30104 |||||||| || |||||||||||||||||| | |||||||||||||| || || || Sbjct 30084726 TCGAGAGCAGACGACGGATTGAAATACTGGACAGAAGCGAATGGTCGATTAGGCTTCACG 30084667 Query 30105 GCTCACTCGTTTTATTTTAACGGTCAAAAACGCATGTTTGAATTGCGACCAGGAGCCATC 30164 | ||| | ||||| ||||| |||||||||||||||||| | |||||| || || Sbjct 30084666 TCGCACGGTTACTATTTCAACGGCCAAAAACGCATGTTTGAACTCAAACCAGGCGCAGTC 30084607 Query 30165 GTTAAAAGTCCACGGTTCATTATCAAGCGAAATACTGATTATACGTTGAATATTTTAGGT 30224 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 30084606 GTTAAAAGTCCACGGTTCATTATCAAGCGAAATACTGATTATACATTAAATATTTTAGGG 30084547 Query 30225 TTCGATAATAACTCAAAATTTTTTAGGGTCTATGTTAGTAAACGTGTAAAAGGTTCTGTC 30284 || || || |||||||||| ||||||||| |||||| ||||||| ||||||||||||| Sbjct 30084546 TTTGACAACAACTCAAAATATTTTAGGGTTTATGTTTGTAAACGCGTAAAAGGTTCTGGA 30084487 Query 30285 GCAGATTTTCAACAGAGGTTACTGATATTCAATGGTCAACCTAAATGGGTTGATGGACCC 30344 |||||| ||||||||| || ||||||||||||||||| |||| ||||||||| || | Sbjct 30084486 TCAGATTATCAACAGAGATTGCTGATATTCAATGGTCAGCCTAGATGGGTTGACGGTGCG 30084427 Query 30345 GTTTTTGATAACACAAAAACGGTCAAAAAATCCATTACATTTAACGTCGGGGAATTCGAT 30404 ||||| |||||| | ||| ||||| |||||||||||||| || || || ||||| ||| Sbjct 30084426 GTTTTCGATAACGGTAGAACAGTCAAGAAATCCATTACATTCAATGTAGGTGAATTTGAT 30084367 Query 30405 GAATGTTATCTGCAATTTGAATACGACCGCAACAATCCTAATAAATGGGGCGGTCTGTTC 30464 ||||||||||||||||| || |||||| |||||||| || |||||||||||||||||| Sbjct 30084366 GAATGTTATCTGCAATTCGAGTACGACAAAAACAATCCCAACAAATGGGGCGGTCTGTTC 30084307 Query 30465 ATGACAGAGCTTGATTTTTATGAAGGCACGACTGACCGTCGCTGGCAACCGGCTCCCGAA 30524 |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| Sbjct 30084306 ATGACAGAGCTTGATTTTTACGAAGGTACGACTGACCGCAAATGGCAACCAGCTCCCGAA 30084247 Query 30525 GATGCGACTCTAGAGACAGACAAGACTCTTGAAGCGACTCAAACTAAACTGACCTTACTT 30584 || ||||| | |||||||||||||| |||||||| || ||||||||||| || |||||| Sbjct 30084246 GACGCGACAATGGAGACAGACAAGACGCTTGAAGCAACGCAAACTAAACTAACTTTACTT 30084187 Query 30585 CAAGGCTCGTTTGCAATTCAAAATTTGACAAGCGCAGGTTCTATCGTTTCTCAAATCAAC 30644 ||||| |||||||| | ||||||||||||||||| || |||| ||| |||||||| Sbjct 30084186 CAAGGTTCGTTTGCGTTCCAAAATTTGACAAGCGCTGGAGCTATAACTTCGCAAATCAAT 30084127 Query 30645 GCGACGAATAACCAAATCTTGATTGAAGCCGAGAAGATTCGACTGAAAGGTAAGACA-TT 30703 || |||| || ||| ||||||||||| ||||| ||||| ||||||||||||| || Sbjct 30084126 GCAACGAGCAATCAAGCTTTGATTGAAGCTGAGAAAATTCGTTTGAAAGGTAAGACGCTT 30084067 Query 30704 ACTGGACGAACTCACGGCTATTGATGGATACTTCAAGCGTCTGTTTGTCGGCGAGGGTAC 30763 ||| || || |||| || || |||||||| ||||| ||||| || || || ||||||| Sbjct 30084066 GCTG-ACCAATTCACTGCAATAGATGGATATTTCAAACGTCTATTCGTTGGTGAGGGTAA 30084008 Query 30764 ATTTGCCAAGCTAAACGCTGAGATTATTGGCTCAAAGACTATCACAGCTGACAAGCTAAT 30823 || || ||||| |||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 30084007 TTTCGCTAAGCTGAACGCTGAGATTATCGGCTCAAAGACTATCACAGCTGACAAGTTGAT 30083948 Query 30824 CATGGACCAGGCTATGGCCAGACTTTTCGTTTCAAGCGATATCTTCACGGATACGCTTGC 30883 ||||| || ||||| | | |||||||||||||||||||||||||| |||||||| Sbjct 30083947 TATGGATTCAGCAATGGCTCGGTTGTTCGTTTCAAGCGATATCTTCACGGACACGCTTGC 30083888 Query 30884 TGCTAAAGAAGCCTTCATCAACAAGCTTAGGTCTGTTGTAGTATCTGCGACTTTATTTGA 30943 | || | |||||| |||| ||| ||| |||| || ||||| |||||||| || |||| Sbjct 30083887 GTCAAAGGCAGCCTTTATCACCAAACTTCGGTCAGTAGTAGTGTCTGCGACCTTGCTTGA 30083828 Query 30944 AGGTTTTAAGGGCCGAATCGGTGGGTTCCAAATTGGTACGCATGATAAAGACCCTTCAAC 31003 ||| | ||||| ||| ||||| |||||||| |||||||| || || ||||| ||||| Sbjct 30083827 AGGGTACAAGGGTAAAATTGGTGGATTCCAAATCGGTACGCACGACAAGGACCCGTCAAC 30083768 Query 31004 TTATTGGCTTACTGGAACGAACCAGTTTGCCGTCGGCATGAGTAACGGTAGTACTAAATG 31063 ||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||||| Sbjct 30083767 TTACTGGCTTACTGGAACGAACCAGTTTGCTGTTGGCATGAGTAACGGTAATACTAAATG 30083708 Query 31064 GGGCCAAACAGCTCTTTGGGTGAACTGGGGAGGTGATTGGAATAAGCCGGGAGATAAAGC 31123 ||| ||||| | |||||||| |||||||| |||||| | | || || || || Sbjct 30083707 GGGTCAAACCTCACTTTGGGTAAACTGGGGCAACGATTGGGAAACCCCTGGCGAAGCCGC 30083648 Query 31124 GTGGTTCGTAAAAAGCACTGGTGAAATGCACTGCTATAATACAGCTCACTTTTGGAATAA 31183 |||| |||||| | ||||| |||||| || || ||| ||| | |||||||||| Sbjct 30083647 TTGGTATGTAAAACGTACTGGCGAAATGTTTTGTTACAATCGAGCATATTTTTGGAATAC 30083588 Query 31184 TCCTAAGATCCACGGTGATTTAGAAGTAACCGGCGATATTGTTTATAGATACGAAAACAA 31243 |||| | |||||| |||| || || ||||| || |||| | ||||| Sbjct 30083587 ACCTATTGTTCACGGTAATTTGCGTGTTACAGGCGAAAT---------ATACTACAACAA 30083537 Query 31244 TGGGGCAATTTATCTAAA--AGGTTACTGGATATATTCCCCTCAATACAAACGAATGGA- 31300 || | |||| | ||| ||||||||||| | || |||||||||| | ||| | Sbjct 30083536 TGAG--AATTCAGGAAAATCTGGTTACTGGATTTCATCACCTCAATACAGCCAAATCTAT 30083479 Query 31301 AGAGTCAAATAACTATCTTTACCT-TTATCGTGATGGTTCAAGCTATAGCTGGATTCCGA 31359 || | ||| |||| | || | ||| | | |||| | | | || |||||||| | Sbjct 30083478 AGCG-AGAATGGCTATATGTATTTCATATGGAG-TGGTGGAGGTAAAAGTTGGATTCCAA 30083421 Query 31360 TGAACAAAGAAATCTCTGACCGTCGCTACAAGTCAAATATCAAAGATAGCCAAGTCTCAG 31419 | ||||| || || || |||||||| ||||| |||||| ||| |||||||||||||| Sbjct 30083420 TCAACAAGGAGATTTCGGACCGTCGATACAAACACAATATCGAAGCTAGCCAAGTCTCAG 30083361 Query 31420 GGCTTGATATTATTGAGCAACTCAAGACGTACAGTTATCGCAAAGAATACGATGGCAAAA 31479 | || ||| | || || | | || ||||||||||||||||||||||||||| |||| Sbjct 30083360 GTCTCGATGTAATCGAAAATTTGAAAACGTACAGTTATCGCAAAGAATACGATAACAAAG 30083301 Query 31480 TCGAGGATATTTCTTGCGGTATCATGGCGCAGGATGTCCAAAAGTATGTTCCTGAAGCGT 31539 | |||||||| |||||||||||||||| || ||||| || || |||||||| ||||| | Sbjct 30083300 TTGAGGATATCGCTTGCGGTATCATGGCACAAGATGTTCAGAAATATGTTCCCGAAGCAT 30083241 Query 31540 TTTTTGAAAATCCTGATGGAGCATACTCATATCGCACATTTGAACTCGTGCCTTATCTTA 31599 ||||||||||||| || || ||||||||||||||||||||||||||||||||||| | | Sbjct 30083240 TTTTTGAAAATCCAGACGGTGCATACTCATATCGCACATTTGAACTCGTGCCTTACTTAA 30083181 Query 31600 TCAAGGCCATTCAAGAACTCAATCAAAAAATACAGAAATTGGAGAAAACAGCATGAACGA 31659 | ||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||| Sbjct 30083180 TAAAGGCTATTCAAGAACTCAATAAAAAAATAGAAAAATTGGAGAAAACAGCATGAACGA 30083121 Query 31660 ACAGGACAAACAAATCAGCACTCTAGCGATTAATTCGCTTGGTGAAAGGGTCGGCAAAGA 31719 ||| |||||||||||||||| |||||||||||| |||||||| || | || ||||||| Sbjct 30083120 ACAAGACAAACAAATCAGCAGTCTAGCGATTAAGTCGCTTGGCGAGAAAATCAGCAAAGA 30083061 Query 31720 GGCTACTCAATCAGCTACGCTAGAAGCCCTCTACACAGTAACCGCCATGGAGCTCGAACA 31779 |||||||||||||||||| ||||||| ||||| ||||| || || ||||| || || || Sbjct 30083060 AGCTACTCAATCAGCTACGTTAGAAGCTCTCTATACAGTTACTGCTATGGAACTTGAGCA 30083001 Query 31780 AATGAAGCAGGTCATCGAATCGGATGAAAAGCTGAAAGCTAAGTTTGAAGAAGTGAAAGG 31839 | |||||| ||||||||||| || ||| |||| ||| | || ||||||||||||||||| Sbjct 30083000 GACGAAGCAAGTCATCGAATCTGACGAAGAGCTCAAATCGAAATTTGAAGAAGTGAAAGG 30082941 Query 31840 AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGACCAAACCATATCTTCGTGGTT 31899 || || | ||| || ||| |||||||| Sbjct 30082940 AAAAATGACAAATGGCAATCAATAACTATGAACTCGCTAGCAAGCCTTATACTCGTGGTT 30082881 Query 31900 TTGGAGACAAAGTTACAACCGTTGTAGAAATCCGTTTGCAAGACGGGAATCGCTATAGCA 31959 |||| ||||| | | || || || ||||||||| | || || ||||| || || | Sbjct 30082880 TTGGCGACAATATCAAGACAGTGGTTGAAATCCGTCTTTCGGAAGGCAATCGTTACAGTA 30082821 Query 31960 CTAATCAGCGAGAATTGTCTGGTGACCGTACACAAGACCAAGAAGACGTGCTTATTCAAG 32019 | || ||| || | | || || || || || ||||| || || | ||||||| Sbjct 30082820 CGAACATGCGTGAGCTTGCAGGAGATCGCACGACTGAGCAAGAGGATGTCTTGATTCAAG 30082761 Query 32020 CAGTATTGGATATTGTGAAATCTGAATTGGATCCAGGAGCAGCAATTGTCAAAACGCAAA 32079 | || |||||||| | || | ||| | ||||||||| |||||||||| || ||||| Sbjct 30082760 CGGTGTTGGATATCATCAAGGCAGAACTAGATCCAGGATCAGCAATTGTGAAGGCGCAAG 30082701 Query 32080 CGCAGCTTGAACAAGCTG 32097 | | || ||||||||| Sbjct 30082700 CTGAAATTAAACAAGCTG 30082683 Score = 1398 bits (1550), Expect = 0.0 Identities = 872/935 (93%), Gaps = 1/935 (0%) Strand=Plus/Minus Query 2953 AATAGAGAGGAGAAGAAAGATGTCAGAGCAAAAAGAAAAATACCACGATAGACGTGGTAG 3012 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30114462 AAGAGAAAGGAGAAGAAAGATGTCAGAGCAAAAAGAAAAATACCACGATAGACGTGGTAG 30114403 Query 3013 GCCTGATGAATTGAAGGTTGAAAAAGTTATTCACCTTTCAATTTTGAGAGGTGAAGGAAC 3072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30114402 GCCTGATGAATTGAAGGTTGAAAAAGTTATTCACCTTTCAATTTTGAGAGGTGAAGGAAC 30114343 Query 3073 TGAAGCGGATAGCATTCGAGTTGTGGAGCAGTATTACAATATGGACGGCGATCTAATATT 3132 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 30114342 TGAAGCGGATAGTATTCGAGTTGTGGAGCAGTATTACAATATGGACGGCAATCTAATATT 30114283 Query 3133 CGAATTAGATCCTTGTTCTCCACATTATCAGGAATTTTTAGGCTTGCGTTGATCTTGTTT 3192 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 30114282 TGAATTAGATCCTTGCTCTCCGCATTATCAAGAATTTTTAGGCTTGCGTTGATCTTGTTT 30114223 Query 3193 ATCTTTGTCCAAATCTAAAATATCTTGTAGTAATTGCTCGTTATCATGGCGTTCAATATA 3252 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 30114222 ATCTTTGTCCAAATCTAAAATATCTTGTAGTAACTGCTCGTTATCATGGCGTTCAATATA 30114163 Query 3253 CCATTTTTGCATAAGTAATTCTATAAATTTCAGCAACTTTTGTGCCTCATGCGATTCAAT 3312 ||||||||||||||||||||||||||| || |||||||| || ||||||| || |||||| Sbjct 30114162 CCATTTTTGCATAAGTAATTCTATAAACTTTAGCAACTTGTGAGCCTCATTCGGTTCAAT 30114103 Query 3313 ATCCACTATAAGATTTATATCTTTTTCTGGATGGGCACCAATGTTTCCAAGCTTTCGTAG 3372 ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct 30114102 ATCCACTATAAGATTTATATCTTTTTCTGGATGAGCTCCAATATTTCCAAGTTTTCGTAG 30114043 Query 3373 GGCATCAAGTACTTTTTTAGTACTTGGGTCAACAAGATCTTTTAAAGCGTCTATCTCATC 3432 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 30114042 AGCATCAAGTACATTTTTAGTGCTTGGGTCAACTGACTCTTTTAAAGCATCTATCTCATC 30113983 Query 3433 TACTAATCTTGCTTTCGAAATCCCCCAAAAATCCCTAATCATTCCTTGTAAACAACGTCT 3492 ||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||| Sbjct 30113982 TACTAATCTTGCTTTAGAAATTCCCCAAAAATCTCTAATCATTCCTTGTAGACAACGTCT 30113923 Query 3493 AGAGAGGGTTGCAGAGGCTTTGGGGCTGAGATTTAAGATAGCGTGAGCTTCTTCATAATC 3552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30113922 AGAGAGGGTTGCAGAGGCTTTGGGGCTGAGATTTAAGATAGCGTGAGCTTCTTCATAATC 30113863 Query 3553 ACTTCTGATAGCCTGAGGGATGTAGTCTGGATAGACTTTTGCGAGTGAAATAGGGTTGAA 3612 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 30113862 ACTTCTTATAGCCTGAGGGATGTAGTCTGGATAGACTTTTGCGAGTGAAATAGGATTGAA 30113803 Query 3613 GTGCATAATGCGGTTTGGGAATTGACTTCCTACGCCCACGATGTCGATTGAAACTTTATG 3672 ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 30113802 GTGCATAATACGATTTGGAAATTGACTTCCTACGCCCACGATGTCGATTGAAACTTTATG 30113743 Query 3673 ACAGTTTGGACAATTCATTGTTTGTATTGTTATTTTGTCACACAAATTTTCTTTGCTAGA 3732 ||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 30113742 ACAGTTTGGACAATTCATTGTTTGTATTGTTATTTTGTCGTTCAAATTTTCCTCAACCTT 30113683 Query 3733 AAAATATGGACGACGAATCAAAAAGTGGTGTTCGTCTTCTCGAAAAGTATCGTCGTGATT 3792 || |||||||||||||||| |||||| |||||| |||||||| || ||||||| ||| || Sbjct 30113682 AACATATGGACGACGAATCCAAAAGTAGTGTTCTTCTTCTCGGAATGTATCGTAGTGGTT 30113623 Query 3793 TGGAACAGAGCAACCGCAAAATAAGCAGAATAGTTTATTAGAATCCATGAGATTTCTCCA 3852 |||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 30113622 TGGAACTGAACAACCGCAAAATAAGCAGAATAGTTGATTAGAATCCATAAGATTTCTCCA 30113563 Query 3853 ATCATTTTATTTTGATTATACCAAATTTAGAAAGG 3887 || ||||||||||||||||||| |||| |||||| Sbjct 30113562 ATTGTTTTATTTTGATTATACCATATTT-GAAAGG 30113529 Score = 295 bits (326), Expect = 1e-75 Identities = 211/243 (87%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 13663 GAGGAGaaaaaatgaaaccagaaaaaaTTGACAATGTAAACAAGCCAAGCCATTACCAAG 13722 ||||| | ||||| ||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 30101709 GAGGAAGATAAATGGAACCAGAAAAAATTGACAACGTAAACAAACCAAGCCATTATCAAG 30101650 Query 13723 GCTCAAAAGGTCTTGAAAGTATTGAAGTGATTGACAATTTTATTGGCAAATTGCCAGGCA 13782 | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct 30101649 GATCAAAAGGTCTTGAAAGTATTGAAGTGATTGACAACTTTATTGGCAATCTGCCAGGGA 30101590 Query 13783 AGGCAGCATGGTGCTGGGGGAATGCTATCAAGTATCTATTGCGCTTCCAAAAGAAGAACG 13842 ||||||| ||||||||||| || || ||||||||| | | || ||||||||||| || | Sbjct 30101589 AGGCAGCGTGGTGCTGGGGCAACGCAATCAAGTATATGCTTCGTTTCCAAAAGAAAAATG 30101530 Query 13843 GTCTTGAGGATTTGAAAAAAGCACGCAAAAATCTTGATTGGCTTATCGAGGAGATGGAAT 13902 |||||||||| |||| ||||||||||| || ||||||||| | || |||||||||||| Sbjct 30101529 GTCTTGAGGACCTGAAGAAAGCACGCAAGAACCTTGATTGGTTGATTGAGGAGATGGAAC 30101470 Query 13903 ATG 13905 ||| Sbjct 30101469 ATG 30101467 Score = 288 bits (318), Expect = 2e-73 Identities = 279/356 (78%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 32902 GTGGAGGA-AAATACAAATGCAACAGATTAACGAAATTTTATTTAATGGAGCTATCAGCA 32960 || ||||| ||| |||| ||||||| || || |||||| | || ||||| | |||| Sbjct 30081889 GTAGAGGAGAAAGACAA-TGCAACAAATCAATGAAATTATCGCAAACGGAGCAGTTAGCA 30081831 Query 32961 TCCTAGTCATTTTGGTAGGCATCGCAGTCAAGGCAGTCAAAGACTACCTGGTGCAAAAAG 33020 ||||||| ||| || |||| |||||||| ||||| |||||||||||||| || |||||| Sbjct 30081830 TCCTAGTTATTATGCTAGGTATCGCAGTTAAGGCGGTCAAAGACTACCTTGTCAAAAAAG 30081771 Query 33021 GCGGTGAAAAGACAATTAAGATTGTTGAAATCCTTGCTAAGAACGCGGTCAACGCTGTGG 33080 |||| |||||||| || || || || |||||| | ||||||||||| || || ||||| | Sbjct 30081770 GCGGAGAAAAGACTATCAAAATCGTCGAAATCTTGGCTAAGAACGCAGTTAATGCTGTTG 30081711 Query 33081 AGCAAGTAGCTCAAGAGACAGGCTTCAAGGGCGAGGAAAAGCTGGAACAAGCCCGTACGA 33140 |||| || || || || |||| ||| ||||| || || || |||||||| || || | Sbjct 30081710 AGCAGGTCGCAGCCGAAACTGGCTACAAAGGCGAAGAGAAACTTGAACAAGCACGCACTA 30081651 Query 33141 AAATCCGTGCCGAGCTTACAAAATATAACATCAACATGACTGACCGTGACCTTGATACGT 33200 |||| ||||||||||| || ||||| || |||| |||||||||| |||| | ||||| | Sbjct 30081650 AAATTCGTGCCGAGCTAACCAAATACAATATCAGCATGACTGACAATGACTTAGATACAT 30081591 Query 33201 TCATTGAGTCAGCCGTGAAGCAGATGAACGAAGCCTGGAAAGGGGAGTAAGGATGG 33256 | | |||||||| || ||||||||||| || || |||||||| ||||| |||| Sbjct 30081590 TTGTCGAGTCAGCAGTTAAGCAGATGAATGATGCGTGGAAAGGACAGTAATCATGG 30081535 Score = 152 bits (168), Expect = 1e-32 Identities = 112/128 (88%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 1228 CATTGATTTT-ACCTCACTTTTTTGTTAAAATGAGTATAAGAAAACGACCTTTTGAATGG 1286 |||||||||| |||||| ||| ||| ||||||| |||||| ||| ||||||||| ||||| Sbjct 30117705 CATTGATTTTTACCTCA-TTTCTTGATAAAATGGGTATAAAAAAGCGACCTTTTTAATGG 30117647 Query 1287 TTATTTCTTATACCGGATTTCCTCACACTCAAAATTTGGCGATGGCGAGTGTGGGGATTT 1346 || |||||||||| |||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 30117646 TTGTTTCTTATACTGGATATCCTCATACTCAAATTTTGGCGAAGGCGAGTGTGGGGATTT 30117587 Query 1347 TTTATTAA 1354 || || || Sbjct 30117586 TTAATAAA 30117579 Score = 109 bits (120), Expect = 1e-19 Identities = 99/122 (81%), Gaps = 11/122 (9%) Strand=Plus/Minus Query 9989 AACGTGCCGCGAACCACGTTAAAAGCGAGCTAGAATATGCGTCAATC--GGTCGTGTGAC 10046 ||||||||| |||||||| |||||||| |||||| |||||| | ||| |||||| Sbjct 30106288 AACGTGCCGTGAACCACGAAAAAAGCGAACTAGAAA--GCGTCAGTAAAGGTTATGTGAC 30106231 Query 10047 CT-GGACGAGCGACTGCCCGTATTTAGCCGAATTCACAA------AGGCAGTCGTATTTT 10099 || |||||||||||||||||||||||||| || |||||| ||||||||| ||||| Sbjct 30106230 CTTGGACGAGCGACTGCCCGTATTTAGCCAAACTCACAACAACAGAGGCAGTCGCATTTT 30106171 Query 10100 TT 10101 || Sbjct 30106170 TT 30106169 Score = 102 bits (112), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 29604 GCCAAAGCTAAAGCGGAAGAGGTCAAGAAAAGTCTGACAGAGACAATCGACCAACGTTTT 29663 |||||||| ||||| ||||||||| || |||||| |||||||| || ||||| |||||| Sbjct 30085359 GCCAAAGCCAAAGCCGAAGAGGTCGAGCGAAGTCTAACAGAGACCATTGACCAGCGTTTT 30085300 Query 29664 CGTGATTTCGACAGCACTGGCTTGAACGAAATCAAGCAGAAGGCTGAAGAAGCATTACAG 29723 |||||||| || ||| | || || ||| | |||||||| || ||||| || | Sbjct 30085299 CGTGATTTTGATAGCGCAGGTCTGCGTGAAGCCCGACAGAAGGCAGACGAAGCCTTGACG 30085240 Query 29724 AGGGTCGGAGCAAATACTTTGCTAGCTCAGGAAGCAAAACAAATCAGTGAGCAGGC--AA 29781 | | || || | || || || || | ||||| |||| ||||| ||||| || || Sbjct 30085239 AAAGCGGGTGCTAGCACCTTACTTGCCGAAGAAGCCAAACGTATCAGCGAGCAAGCGAAA 30085180 Query 29782 GAC 29784 ||| Sbjct 30085179 GAC 30085177 Score = 91.5 bits (100), Expect = 3e-14 Identities = 178/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 12916 ACATGAAACGATTTATCGCAATCTGGATATTATTATCCGCTGGATTGAATATTTGGAAGA 12975 ||||||||||||| |||||||| ||||| || |||| |||||||||||||| ||| ||| Sbjct 30103616 ACATGAAACGATTCATCGCAATATGGATTTTGCTATCTGCTGGATTGAATATCTGGCAGA 30103557 Query 12976 -GTATCCAGATTAAGAAATTAGAAGAAAAGCGCCCAATTATCGTCTATAAAGCTGATAAT 13034 | || | || | | |||||||| ||| || || | |||||||||| ||||| Sbjct 30103556 TGGAT-AAAATCAGGGAATTAGAAAGTAAGAAGCCGATGGTTATCTATAAAGCGGATAAC 30103498 Query 13035 CAAGGCGCAGAAATCAAAGGCAGGGTCGTCCACAAGGAGAAGA-TTGGCGAACTCTACAC 13093 ||| || || || || | ||||||| | || | || || ||| | || ||||| Sbjct 30103497 GCAGGTGCTGATATATTCGGTAAGGTCGTCGAGAAAG-GACGACACGGCAAGCTATACAC 30103439 Query 13094 GATCACGATACAGAACTACGGCATTTTCGTAGTATCGCAAGACAACTACGAATTTTTGAA 13153 | || || | | ||||| | ||||| || || | ||| || || |||| Sbjct 30103438 TCTTACTATTCGTGATTACGGGGTGTTCGTGGTTACGAAGGACGTGTATGACAAGGTGAA 30103379 Query 13154 AATCGGAGACGAGGTGAG 13171 | | ||||| |||||||| Sbjct 30103378 AGTTGGAGATGAGGTGAG 30103361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110892767078700