Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 141 6e-29 >seq6 Length=22489619 Score = 141 bits (156), Expect = 6e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| Sbjct 14544979 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 14544920 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || ||||| | |||||| || ||||| ||||| | ||| || |||||||| Sbjct 14544919 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14544860 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || || ||||| || |||||||||| ||||| || || Sbjct 14544859 CCAGATCTTCACTCCTTTCTCTGACAGCTCTTTGGCATTTGTTGATCC 14544812 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| ||||| || |||||||||||||| || || Sbjct 14545859 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14545800 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| | ||||||| | | || | |||||| |||||||| || ||||| |||||| Sbjct 14545799 ACCCCCAGACCCATGT-CGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCA 14545741 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||||| |||||||| | || || ||| || || || || || Sbjct 14545740 GACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 14545699 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 14546006 TTCAGAGGTTCAACGTGATTGAGGTAGACGTGAGCATCTCCCAGAGTGTGGACAAAGTCG 14545947 Query 25482 CCCGG 25486 || || Sbjct 14545946 CCGGG 14545942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137496364325