Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 8e-14 seq12 91.5 8e-14 seq19 86.0 3e-12 seq9 86.0 3e-12 seq21 82.4 4e-11 >seq14 Length=29974747 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 15162301 TAAAAAACATTATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 15162242 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||| |||||| Sbjct 15162241 CGCTCTAACCAACTGAGCTAACCGGCCGT 15162213 >seq12 Length=31653010 Score = 91.5 bits (100), Expect = 8e-14 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||| ||| ||| |||||| | |||||||||| ||||||| |||||||||| Sbjct 17227827 TAATAAACAATAAAAGGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 17227768 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||| |||||||||||||| ||||| Sbjct 17227767 CACCACGCTCTAACCAACTGAGCTAACCGGCCG 17227735 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 14819228 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14819169 Query 11528 CC 11529 || Sbjct 14819168 CC 14819167 >seq19 Length=33316517 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 13055749 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 13055690 Query 11528 CCGT 11531 |||| Sbjct 13055689 CCGT 13055686 >seq9 Length=12726346 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 2447953 AAAAAGAAAATGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 2447894 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 2447893 GCTCTAACCAACTGAGCTAACCGGCC 2447868 >seq21 Length=24065024 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 16149360 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 16149301 Query 11528 CC 11529 || Sbjct 16149300 CC 16149299 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491120326900