Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq17 163 4e-35 seq19 113 6e-20 >seq17 Length=30456855 Score = 163 bits (180), Expect = 4e-35 Identities = 203/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 |||| |||||| | || ||||| ||| | | || | |||||||| |||| || Sbjct 29724423 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 29724364 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || || || ||||||||||| |||||||| | || ||||| ||| ||| |||| Sbjct 29724363 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 29724304 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||||||||| || |||||||||| ||| | || |||| || || |||||||| Sbjct 29724303 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 29724244 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 || |||||||| ||||| | | ||| ||| | ||||||||| || | |||||| || Sbjct 29724243 GGCCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 29724184 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||| ||| || ||||| ||||||||||| Sbjct 29724183 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 29724146 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| ||||||||| ||| ||||||| ||| ||||| || Sbjct 29722825 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 29722766 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 29722765 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 29722706 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || || ||||| || || ||||| || || ||||| Sbjct 29722705 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 29722665 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| ||||| || || ||||| ||||| || | | Sbjct 29721847 TCACCTACGACTCCCATAGGGGTTGGGCAGTCAGCCGGAACTGGAGGAAGGGCACGGGTA 29721788 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| | |||||||||||| |||| | || ||||| ||||| | Sbjct 29721787 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 29721728 Query 10407 GGAGGGCTGTCAATCAAATCGGATC 10431 ||||| |||||||||| || ||||| Sbjct 29721727 GGAGGACTGTCAATCATATGGGATC 29721703 >seq19 Length=33316517 Score = 113 bits (124), Expect = 6e-20 Identities = 139/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 8752 AAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTT 8811 |||||| | || || || ||||||||||| |||||||| | || ||| |||| || Sbjct 26613547 AAACCCGTC-TCGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATT 26613489 Query 8812 CGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGAT 8871 | | | |||||||| ||||| || || || |||| ||| | |||||||| ||||| || Sbjct 26613488 CCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATAT 26613429 Query 8872 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTC 8931 || |||||| || | || |||| || || |||| || ||||||| || || ||||| Sbjct 26613428 GGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCCAGGGCGTCAATGTC 26613369 Query 8932 TCCGTAAAG 8940 ||||| || Sbjct 26613368 GCCGTAGAG 26613360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708524578586000