Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16 127 2e-24 seq18 95.1 1e-14 seq13 95.1 1e-14 >seq16 Length=24388307 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| |||| || | ||||| ||| | || || ||||| || ||||| || || Sbjct 2613273 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2613214 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| ||||||||||| || ||||||| | || ||||| || ||||| Sbjct 2613213 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2613154 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| |||||||| || | ||| |||||||| ||| | | || ||| | | || || Sbjct 2613153 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || |||||||| || |||||||| Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 >seq18 Length=80077792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| || || |||| || | |||| ||| | || || ||||| || | || | Sbjct 51870038 TTTACTGGCCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGT 51870097 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| | |||||||||||| || || ||||||| | || ||||| | Sbjct 51870098 AGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 51870157 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || || || | | || ||||||||| | | |||||| | Sbjct 51870158 CAGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGG 51870217 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | ||||||||||| ||||| || || || || ||||||||||||| Sbjct 51870218 GCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGC 51870274 >seq13 Length=27080333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | || || ||| || ||| | ||| |||||||| |||||| Sbjct 11062561 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 11062620 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || || || || || || || || | || || ||||| Sbjct 11062621 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 11062680 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | || ||| | | || || || | ||||||||||| || || || ||| Sbjct 11062681 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 11062740 Query 94991 TTCACAAAGATCTGCATGCTTACAACA 95017 ||||||||||||||||| ||| || || Sbjct 11062741 TTCACAAAGATCTGCAT-CTTGCACCA 11062766 Score = 93.3 bits (102), Expect = 4e-14 Identities = 170/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 94762 TTTTTTAAAAT--TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 ||||||| ||| ||||| || || |||| || | || | ||| | || ||||| Sbjct 11060499 TTTTTTAGAATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCT 11060558 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||| || ||| | ||| ||||||||||| || ||||||| Sbjct 11060559 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATC 11060618 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | || ||||| || || || || || || || || | || || ||||||||| | Sbjct 11060619 AGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCA 11060678 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||||| | | || || || | ||||||||||| || || || || || |||||| Sbjct 11060679 ATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAG 11060738 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 11060739 ATTTGCAT 11060746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291059909000