Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24 181 2e-41 seq21 165 1e-36 seq18 156 7e-34 >seq24 Length=19721749 Score = 181 bits (200), Expect = 2e-41 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3186871 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3186812 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 3186811 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 3186752 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3186751 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3186692 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3186691 GCACGCTAAGAGGAAGACCGTGACCGCCATGGATGTGGTATACGCTCTCAAGAGGCAGGG 3186632 Query 16672 CCG 16674 ||| Sbjct 3186631 CCG 3186629 Score = 181 bits (200), Expect = 2e-41 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3197840 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3197781 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| ||||||| | |||| || |||| Sbjct 3197780 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 3197721 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3197720 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3197661 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3197660 GCACGCTAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3197601 Query 16672 CCG 16674 ||| Sbjct 3197600 CCG 3197598 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3166292 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3166351 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 3166352 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 3166411 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3166412 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3166471 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3166472 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3166531 Query 16672 CCG 16674 ||| Sbjct 3166532 CCG 3166534 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || || |||||||| || ||||||||||| || || Sbjct 537495 CGCCAAGCGGCACCGTAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 537436 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||||||||| |||| || || |||| || |||| Sbjct 537435 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 537376 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || || || Sbjct 537375 CCGCGGCGTGCTGAAGGTGTTCCTAGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 537316 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 537315 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 537256 Query 16672 CCG 16674 ||| Sbjct 537255 CCG 537253 >seq21 Length=24065024 Score = 165 bits (182), Expect = 1e-36 Identities = 201/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 5708046 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 5708105 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 5708106 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 5708165 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 5708166 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 5708225 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 5708226 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 5708285 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || || ||||| || || Sbjct 5708286 CCGCACTCTGTACGGCTTCGGGGGTTAAACTGCT 5708319 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 1768706 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 1768765 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 1768766 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 1768825 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 1768826 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 1768885 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 1768886 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 1768945 Query 16672 CCG 16674 ||| Sbjct 1768946 CCG 1768948 >seq18 Length=80077792 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 61884015 CGCCAAGCGCCACCGTAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCGGCCAT 61883956 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 61883955 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 61883896 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 61883895 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 61883836 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 61883835 GCACGCAAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 61883776 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 61883775 CCGCACTCTGTACGGCTTCGGAGGTTAAACT 61883745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075177142325