Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25 443 3e-119 seq22 105 8e-18 seq20 93.3 5e-14 >seq25 Length=32766887 Score = 443 bits (490), Expect = 3e-119 Identities = 1293/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| |||||||| | || || | | | ||||| ||||| || ||||| | | Sbjct 10519887 CTGGATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10519946 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 10519947 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 10520006 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10520007 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10520066 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | | | ||| Sbjct 10520067 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10520126 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | |||||| || | ||| | | Sbjct 10520127 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 10520184 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || || ||| || ||| || | || || ||||| || || || Sbjct 10520185 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10520244 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 10520245 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATG 10520304 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| | || || || || | | || || || ||||| || Sbjct 10520305 TTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10520364 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || || || || ||||| || || || | ||| || || | || ||||| ||| Sbjct 10520365 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGA 10520424 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 10520425 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 10520484 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897 ||| || || || || || ||| | || ||||||| | ||| | Sbjct 10520485 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 10520544 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62955 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 10520545 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || || || |||||||| || || | || || || || ||||| |||| || || | Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10520722 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACA 63132 | || | ||||| | | ||| ||||| ||| | || ||| ||||| | Sbjct 10520723 GCTGCT-GCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10520781 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || |||||||| |||||||| | ||||| |||||||| || |||||||||| Sbjct 10520782 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10520839 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGCT 63251 | ||||| || || || ||||| ||||| || || ||||| ||||| ||| | Sbjct 10520840 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 10520899 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 10520900 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 10520958 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 10520959 TCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG 10521018 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | ||| Sbjct 10521019 CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10521078 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | || ||||| || | ||| |||||||| | | || || || | | Sbjct 10521079 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 10521138 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || || || || || || || || | ||||| | || | ||||| ||||| Sbjct 10521139 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 10521198 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || ||||| || || || || || |||| || | || | Sbjct 10521199 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 10521258 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 10521259 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 10521318 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| | || | ||| || || | || || || || | || | ||| | | Sbjct 10521319 TAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 10521378 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| |||| || | | || ||| || |||| || |||||| |||| | Sbjct 10521379 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 10521438 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || || || ||||||| || || |||| |||||||| || |||||||| Sbjct 10521439 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAGG 10521498 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---G 63907 ||||| | || | || || || | || | ||| || || || ||||| | | Sbjct 10521499 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTGGCG 10521557 Query 63908 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63967 ||| || ||| || |||||| ||| | ||||||||||| || || || | || Sbjct 10521558 TTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCTT 10521614 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || ||||| || || || || ||||| || || ||||| || ||||| || || || Sbjct 10521615 CTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 10521674 Query 64028 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 64087 |||| || || ||||| || || || ||||| || ||||| | || || || || Sbjct 10521675 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGT 10521734 Query 64088 TACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64147 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 10521735 GACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 10521794 Query 64148 CGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204 || ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 10521795 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 >seq22 Length=23629796 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 3940981 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3940922 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| ||||| || ||||| ||||||||||| || || || || |||| Sbjct 3940921 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3940862 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 3940861 CCACCACTCTCTCTCC 3940846 >seq20 Length=26302745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 12394070 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 12394129 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | || | ||||||||| || || ||||| || || || ||||| ||||| | Sbjct 12394130 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12394189 Query 33446 CAATAAGTCTCTCTCC 33461 | | ||| | ||| || Sbjct 12394190 CCACAAGACGCTCCCC 12394205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947005329000