Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq25 241 1e-58 seq13 113 4e-20 seq18 107 2e-18 seq16 104 2e-17 >seq25 Length=32766887 Score = 241 bits (266), Expect = 1e-58 Identities = 981/1514 (65%), Gaps = 54/1514 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 10519975 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10520034 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 10520035 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 10520094 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || ||| | |||||| ||| ||| ||||| Sbjct 10520095 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 10520154 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || |||||| || ||||||||||||||||| | ||||||| |||| |||| | Sbjct 10520155 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 10520214 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| | || || | | |||||||||||| || |||||||| | Sbjct 10520215 CCCTCGTACGTCTCGTA--GGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGG 10520272 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| || ||| Sbjct 10520273 CGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGA 10520332 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| ||| | || || ||||| || ||||| | || | ||||| |||| Sbjct 10520333 AAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 10520392 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| ||| | ||| || | ||| | | ||| |||||| Sbjct 10520393 TGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTA-GTTGAT----GTCGAT 10520447 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || || | |||| ||| | |||||| || | | || ||| | ||||| || Sbjct 10520448 GATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA 10520507 Query 145591 ---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| ||| || | ||| | |||| |||||| || |||| || || || Sbjct 10520508 AGTCCG---CTCTGGCGTGA-CGTACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGAC 10520561 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| ||| || | | |||| | || | ||| | ||| | ||||| || ||||| Sbjct 10520562 GGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGAT 10520621 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| || Sbjct 10520622 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 10520681 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACC 145825 || || || ||| | ||| | ||| || || || | |||||| |||| Sbjct 10520682 GGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCACC 10520739 Query 145826 TGCTGCTGGT-AGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | || | | |||| |||| || ||||| ||||||||| ||| ||| | Sbjct 10520740 ACC--CTTTTCACTCTCCCTTCCTTC-TCATATTTGGTGTAGAGCTTCTCGAACTCCTCT 10520796 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || |||| ||| ||| || ||||||| | |||||||||||| ||||| | |||| Sbjct 10520797 CCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTG 10520856 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCG 146000 | || | || ||| |||| || || | ||||| ||||| | | ||| | || Sbjct 10520857 CTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCT 10520916 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || ||| ||||| || |||| ||||| | || | | | ||| || Sbjct 10520917 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 10520974 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGT 146117 |||| || || | ||| | ||||| ||| || | || | ||||| |||||||| |||| Sbjct 10520975 GCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGT 10521034 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||||||| | || | || ||| ||| | | ||| ||| |||||| | Sbjct 10521035 ACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGG 10521094 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | || | | || || || | ||| || |||||||| ||||| Sbjct 10521095 TGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAG 10521154 Query 146238 CGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || ||||||| || ||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 10521155 CGGACTTGGAAATGAGC-GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCG 10521213 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGA 146352 |||| ||| ||||||| ||||| | ||| ||||| | ||| ||||| || Sbjct 10521214 TCCTTC--ATGGCGAGCAGGAAGCAACTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTT 10521269 Query 146353 GAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGA 146411 ||| | ||||| ||||| || || || || || | || | || || |||| Sbjct 10521270 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGA 10521328 Query 146412 TAGCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470 ||| | | ||||| ||| || || || || | | || | |||||||||||| || Sbjct 10521329 CGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGC 10521387 Query 146471 GGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTAT 146530 || ||||| ||||||| || ||||| | || ||| |||||| || ||| | Sbjct 10521388 GGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAG 10521447 Query 146531 CCGAAAAATTTGTA 146544 ||||| || ||||| Sbjct 10521448 CCGAAGAAGTTGTA 10521461 >seq13 Length=27080333 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| || ||||| | ||| | |||||| | |||||||| |||||||||||||| | Sbjct 15278733 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15278792 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 15278793 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 15278852 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 15278853 ACTCGATGAT 15278862 >seq18 Length=80077792 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| |||||||| || || ||||| ||| Sbjct 51870045 GCCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 51870104 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | | ||||||||| || || Sbjct 51870105 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 51870164 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || || || ||||| | ||| | || || ||| ||| | Sbjct 51870165 GATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 51870224 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || || || || ||||| ||||||||| Sbjct 51870225 CTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 51870273 >seq16 Length=24388307 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || | |||||| || || |||||| Sbjct 2613260 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCA 2613201 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | | ||||||||| ||||| || |||||||| Sbjct 2613200 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 2613141 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | ||| || | | ||| | ||||| ||| ||| | || | ||| | Sbjct 2613140 TCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGAT 2613082 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || ||||| |||||||||||||| Sbjct 2613081 GGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012652496000