Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18 122 6e-23 seq5 111 1e-19 seq12 100 2e-16 seq24 82.4 5e-11 >seq18 Length=80077792 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 18285080 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 18285021 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| ||| | | |||| ||||||| | ||||| || | Sbjct 18285020 ATCGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGATATGCTTGATGGGT 18284961 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 18284960 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 18284909 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 43136292 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 43136351 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 43136352 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 43136386 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 66412094 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 66412153 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 66412154 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 66412188 >seq5 Length=28616086 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||||||||||||||| ||| | || ||||| ||||||||||| Sbjct 18325534 AAGCCCGTTTCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGTAATCTCGT 18325475 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| |||||||||||||||||||||||| || Sbjct 18325474 TCATCCATTCATGCGCGTCACTAATTAGATGGCG 18325441 >seq12 Length=31653010 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| ||| | || ||||| || |||||| | Sbjct 11014788 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCAT 11014847 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||| ||||||||||||||||||||| Sbjct 11014848 TCATCCATTTATGTGCGTCACTAATTAGATGACGA 11014882 >seq24 Length=19721749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||| | ||| ||||||| | || ||| | || ||||| || |||||||| Sbjct 15971036 AACCCCGTTTCATTGTCTGTGGTCTTTCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 15971095 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||| ||||||||||||||||||||| Sbjct 15971096 TCGTCCTTTCATGTGCGTCACTAATTAGATGACGA 15971130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947097945775