Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq25 434 1e-116 >seq25 Length=32766887 Score = 434 bits (480), Expect = 1e-116 Identities = 1291/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| |||||||| | || || | | | ||||| ||||| || ||||| | | Sbjct 10519887 CTGGATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10519946 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 10519947 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 10520006 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10520007 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10520066 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | |||| | | | ||| Sbjct 10520067 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10520126 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | |||||| || | ||| | | Sbjct 10520127 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 10520184 Query 62398 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 | || || || || || ||| || ||| || | || || ||||| || || || Sbjct 10520185 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10520244 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 | || || || || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 10520245 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATG 10520304 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || ||||| | || || || || | | || || || ||||| || Sbjct 10520305 TTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10520364 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 | || || || || || ||||| || || || | ||| || || | || ||||| ||| Sbjct 10520365 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGA 10520424 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 10520425 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 10520484 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62752 ||| || || || || || ||| | || ||||||| | || | Sbjct 10520485 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 10520544 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62810 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 10520545 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 62811 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 62870 | || || || ||||||||||| || | || || || || ||||| |||| || || | Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10520722 Query 62931 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 62987 | || | ||||| | | ||| |||| ||| | || ||| ||||| | Sbjct 10520723 GCTGCT-GCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10520781 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || |||||||| |||||||| | |||||| |||||||| || |||||||||| Sbjct 10520782 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10520839 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGCT 63106 | ||||| || || || ||||| ||||| || || ||||| ||||| ||| | Sbjct 10520840 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 10520899 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 10520900 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 10520958 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | | || | ||||| || |||| || ||||| | | || || | ||||| Sbjct 10520959 TCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG 10521018 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10521019 CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10521078 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| | || ||||| |||| ||| |||||||| | | || || || | | Sbjct 10521079 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 10521138 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || || || || | ||||| | || | || || |||||| Sbjct 10521139 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 10521198 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || ||| ||||| || || || || || |||| || | || | Sbjct 10521199 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 10521258 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 10521259 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 10521318 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| | || | ||| || || | || || || || | || | ||| | | Sbjct 10521319 TAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 10521378 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||| |||| || | | || ||| || |||| || |||||| |||| | Sbjct 10521379 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 10521438 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || || || || ||||||| || || |||| |||||||| || |||||||| Sbjct 10521439 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTGAGG 10521498 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---G 63762 ||||| | || | || | || | || | ||| || || || ||| | | | Sbjct 10521499 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTGGCG 10521557 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 ||| || ||| ||||||||| ||| | ||||||||||| || || || | || Sbjct 10521558 TTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCTT 10521614 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 || || || || || || || || ||||| || || ||||| || ||||| || || || Sbjct 10521615 CTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 10521674 Query 63883 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 63942 |||| || || ||||| || || || ||||| || ||||| | || || || || Sbjct 10521675 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGT 10521734 Query 63943 TACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64002 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 10521735 GACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 10521794 Query 64003 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 64059 | ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 10521795 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10521851 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631801990000