Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq25 102 2e-16 seq18 93.3 9e-14 seq17 93.3 9e-14 seq24 91.5 3e-13 seq22 91.5 3e-13 seq1 91.5 3e-13 seq20 89.7 1e-12 seq2 89.7 1e-12 seq14 86.0 1e-11 >seq25 Length=32766887 Score = 102 bits (112), Expect = 2e-16 Identities = 586/927 (63%), Gaps = 23/927 (2%) Strand=Plus/Plus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||||||| | || || ||||| | || | |||||| |||| Sbjct 10520185 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10520244 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||||||||| ||||| | || || ||| ||| |||||| |||| | Sbjct 10520245 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATG 10520304 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 |||||| |||| | | || || || | || | ||| ||| | || | Sbjct 10520305 TTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10520364 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 |||||||| || || | || | || | | ||||||||| ||||| || |||||| Sbjct 10520365 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGA 10520424 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGACATGC 293826 |||| || | | || ||| || ||| ||||| ||| || |||||| || Sbjct 10520425 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG--TGA 10520482 Query 293827 TTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGCACGA 293881 | || || | || ||||| || | || | |||| || | ||||| ||| Sbjct 10520483 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGA 10520542 Query 293882 TGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCAC 293941 || | | | || || || ||| ||||| ||||||||| || | ||| | | Sbjct 10520543 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 293942 AGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGT 294001 ||||||| |||| ||||||||||||| || ||| || |||| ||| | || Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 294002 CTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGA 294061 | |||| ||| | || || | || ||||| |||| | || |||| || ||||| Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10520722 Query 294062 CATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCT 294121 | | ||||||||||| | || | |||| || |||||| |||||||| |||| Sbjct 10520723 GCTGCTGCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 10520782 Query 294122 CTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGA 294180 ||| | |||| || | || ||| ||||| |||||| ||| || | | Sbjct 10520783 TCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACATCAAG 10520841 Query 294181 GACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCG 294237 ||||| |||| | ||||||| | ||||||||| || ||| || ||||| ||| Sbjct 10520842 GACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10520898 Query 294238 TAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGCAGGA 294295 || || | || | ||| | | | ||||| ||| || | | | | || ||||| Sbjct 10520899 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCCAGGA 10520956 Query 294296 AGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTCCTGC 294352 |||| | | |||| || || |||||||||| || |||| ||| || || Sbjct 10520957 AGTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGT 10521016 Query 294353 GTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGC 294412 || ||||||| |||| || ||| ||| | || ||||||| ||||| | | Sbjct 10521017 TGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 10521076 Query 294413 CATCGGACTCACCATTGGTTCC-GCGA 294438 | | ||| | || ||||| || |||| Sbjct 10521077 CGTTGGAGTTGCCGTTGGTGCCTGCGA 10521103 >seq18 Length=80077792 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 44637341 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 44637282 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 44637281 GCCCCACGTTGGGC 44637268 >seq17 Length=30456855 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 24448414 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 24448355 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 24448354 GCCCCACGTTGGGC 24448341 >seq24 Length=19721749 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9674577 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9674636 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9674637 CCCCACGTTGGGC 9674649 >seq22 Length=23629796 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 18763326 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 18763267 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 18763266 CCCCACGTTGGGC 18763254 >seq1 Length=30011118 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 19989782 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19989723 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 19989722 CCCCACGTTGGGC 19989710 >seq20 Length=26302745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8106088 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8106029 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8106028 CCCACGTTGGGC 8106017 >seq2 Length=25664663 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 |||||| || ||||| || |||||||||||||| |||||||| |||| || | Sbjct 3552410 CTGCACGCTGATCCTTACTGAGGGAGACTCAGCCAAGACGCTGGCTGTGTCTGGGCTGGG 3552351 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| || || | || ||| | ||||||||||| || ||| |||||||||| || Sbjct 3552350 AGTGGTGGGACGGGACCGCTACGGTGTGTTCCCCCTCCGGGGAAAGATGCTCAACGTCCG 3552291 Query 217956 CGATGCCTC 217964 || || || Sbjct 3552290 GGAGGCTTC 3552282 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 8170586 TAGCCCGGCTAGCTCAGTCGGTAGAGAATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 8170527 Query 142562 GCCCCACATCGGGC 142575 |||||| | |||| Sbjct 8170526 GCCCCATGTTGGGC 8170513 >seq14 Length=29974747 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 25115770 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 25115711 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 25115710 TCCCGGCAGAGA 25115699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836470771025