Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008721.2 Length=36019 Score E Sequences producing significant alignments: (Bits) Value seq18 197 3e-46 >seq18 Length=80077792 Score = 197 bits (218), Expect = 3e-46 Identities = 192/247 (78%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 19488 GGTCGCATGACTCGTGATGCAGAACTTCGTTATACTCCGTCAAACCAGGCTGTTGCGACT 19547 || || ||||| ||||| || || | |||||||| || ||||| || ||||||||| Sbjct 59386137 GGGCGTATGACCCGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGCGACT 59386078 Query 19548 TTTACTCTAGCAGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTT 19607 |||||||| ||||| ||||| | ||||| | |||||| || || ||||| || || ||| Sbjct 59386077 TTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTT 59386018 Query 19608 ATCAACGTAGTCATTTGGCGTCAGCAAGCCGAAAACTTGGCGAACTGGGTTAAGAAAGGT 19667 ||||| || || || |||||||| || || ||||| | || ||||||| ||| ||||| Sbjct 59386017 ATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGC 59385958 Query 19668 GCTCTGATTGGAATTACAGGTCGCATTCAGACTCGTAGCTATGACAATCAGCAAGGGCAA 19727 |||| || || || ||||| || || ||||||||||| || || || |||||||| ||| Sbjct 59385957 TCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATAACCAGCAAGGACAA 59385898 Query 19728 CGTGTCT 19734 ||||||| Sbjct 59385897 CGTGTCT 59385891 Score = 114 bits (126), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 7174 TGTTTGATTTTCTACGTGCACTCATCGCAACCGAGGACGGACTTGTCCTCTTTTTACTTG 7233 ||||| ||||| || | ||||||| ||| || || || ||| | | | | | | Sbjct 50176382 TGTTTAATTTTTTAAGAAAGCTCATCGAAACAGAAGATGGGCTTATTTTGTATGCGTTAG 50176441 Query 7234 GGCTCATTGTTACCATGGAAATTGTTGATTTTCTGTCAGGTACCTTTGCTGCTATGATCA 7293 | | ||||| | ||||||||||||||||||| ||||| || ||||| || || | | Sbjct 50176442 CGTTAATTGTCATCATGGAAATTGTTGATTTTGCATCAGGAACATTTGCGGCCATTGTAA 50176501 Query 7294 ATCCTGATATTGAGTACAAATCTAAAATTGGCATCAATGGTCTTATCCGTAAAATGATGG 7353 |||||||| ||||||| || || |||||| |||||||| | || || ||| | | | Sbjct 50176502 ATCCTGATGTTGAGTATAAGAGTAGAATTGGAATCAATGGATTAATTCGAAAAGTCTTAG 50176561 Query 7354 GAATCATCTTA-CTTACTG-TATTGATTCCGATGTCAGTGCTTTTGCCCGA 7402 | || | ||| |||||| |||||||||||||||| || | ||||| || Sbjct 50176562 GGAT--TTTTATGTTACTGTTATTGATTCCGATGTCTGTTTTGTTGCCTGA 50176610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115139165818050