Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13 165 2e-35 seq18 161 2e-34 seq16 159 6e-34 seq22 93.3 8e-14 seq20 84.2 4e-11 >seq13 Length=27080333 Score = 165 bits (182), Expect = 2e-35 Identities = 161/205 (79%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| ||||| |||||||| || ||||| || || | |||||||| | ||| Sbjct 11060543 GTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 11060602 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || || || || ||||| || || ||||| ||||| || || ||||| Sbjct 11060603 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 11060662 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||||||| |||| ||| || |||| |||||||||||| || | Sbjct 11060663 GGCCTTGACGTTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGG 11060721 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||| || || ||||| Sbjct 11060722 TGAGGGTCTTGACAAAGATTTGCAT 11060746 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 || ||| || |||||||| || ||||| || || ||||| || || | |||||||| | Sbjct 11062551 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11062610 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || || || || || ||||| || || ||||| ||||| || || || Sbjct 11062611 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11062670 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||| ||| ||| ||||| || | || || |||| |||||||||||| || Sbjct 11062671 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11062730 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || |||||||| Sbjct 11062731 GGTGAGGGTTTTCACAAAGATCTGCAT 11062757 >seq18 Length=80077792 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || ||||| || || ||||| || || | ||||| || Sbjct 51870064 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCC 51870123 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || || ||||| ||||| || || Sbjct 51870124 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 51870183 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | ||| ||||||||| ||| |||||||| | || || |||| |||||||||||| Sbjct 51870184 AGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTG 51870243 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||||||| Sbjct 51870244 CCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 >seq16 Length=24388307 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||||| | |||| ||| || |||||||| || |||| ||| || || || Sbjct 2613273 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2613214 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||| || || || || || || || || ||||| || || Sbjct 2613213 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2613154 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| || || |||||||||||||| ||| ||| ||||| || | || || Sbjct 2613153 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||| || ||||| |||||||| Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 >seq22 Length=23629796 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3948751 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 3948810 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 3948811 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 3948846 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| ||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3941830 CATGACTCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 3941771 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 3941770 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 3941735 >seq20 Length=26302745 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 84444 GGTGACGAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTC 84503 ||||| | ||||||||| |||||||||||| ||||| || ||||||| || |||| Sbjct 8106100 GGTGAAGCCAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTC 8106041 Query 84504 GTGGGTTCGAGCCCCACATCGGGC 84527 ||||||||||||||||| | |||| Sbjct 8106040 GTGGGTTCGAGCCCCACGTTGGGC 8106017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622111993000