Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_008799.1 Length=43282 Score E Sequences producing significant alignments: (Bits) Value seq18 105 2e-18 >seq18 Length=80077792 Score = 105 bits (116), Expect = 2e-18 Identities = 387/598 (65%), Gaps = 26/598 (4%) Strand=Plus/Minus Query 18007 CGTGGTATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAGGTG 18066 |||||| | ||| | ||||| || ||| | || || || ||||| || ||||| | ||| Sbjct 30099735 CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTG 30099676 Query 18067 TTTGACGAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATA--TTGGTAGATACCA 18124 || | || || | ||||||||| ||| |||||| | || |||| |||| | Sbjct 30099675 TTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGG--GATAGTA 30099618 Query 18125 ACCCTGACCATCCCGAGC-ATTGGTTGTTGAAAGATTATATTGAAAATACAGATCCTAA- 18182 |||| ||| ||||||| | | ||| | |||||||| | | || || Sbjct 30099617 ACCCAGAC-ATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGACGATATG 30099559 Query 18183 AGCAGGTATACTGAGTCACCAATTTAAGCTCGATGACAATAACTTTCTTAATGATAGATA 18242 | || || ||| || || ||||| ||||| |||| || | ||| ||||| Sbjct 30099558 ATCA--TAGACTTT-----CATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATA 30099506 Query 18243 TAAAGAGTCTATTAAGGCTTCAACACCATCAGGTATGTTCTATGAACGTAACATCAACGG 18302 || ||| ||| | | |||||| | ||| | || ||||| || ||||| || Sbjct 30099505 CCGCGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGG 30099446 Query 18303 TATGTGGGTGTCTGGTGACGGTGTAGTATATGCCGACTTTGATTTGAATGAGAATACGAT 18362 | |||||| | ||||||| || || |||||| || |||||| | ||||||| | | Sbjct 30099445 TTTGTGGGCGACTGGTGAGGGCGTTGTATAT--CG----TGATTTTAGCGAGAATATGTT 30099392 Query 18363 TAAAGCAGATGAACTGGACGACATACCTATCAAAGAATACTTTGCTGGTGTCGACTGGGG 18422 | | | | || || || ||| ||| || || ||||||||| |||||||| Sbjct 30099391 TGTGGATAACGTACCAGAAGATATAACTA------AAGTCTATGCTGGTGTTGACTGGGG 30099338 Query 18423 TTACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGATGGTAACTTTTATTT 18482 || || |||| ||| |||||||| | | ||| | ||| ||| ||||| | Sbjct 30099337 GTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTTTATAT 30099278 Query 18483 TATTGAGGAGCATGCACACCAATTTAAGTTTATTGATGATTGGGTGGTTATTGCAAAAGA 18542 | ||||| || || || |||| || ||||| |||||| | |||| ||||| Sbjct 30099277 CTTAGAGGAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGA 30099218 Query 18543 TATTGTAAGTAGATATGGCAATATTAATTTTTACTGCGATACTGCACGACCTGAATAC 18600 || || ||||||||||||||| |||| |||| |||||||||||| || Sbjct 30099217 AATCAAAAAACGATATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAACAC 30099160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138380758918200