Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_009018.1 Length=38528 Score E Sequences producing significant alignments: (Bits) Value seq18 145 2e-30 >seq18 Length=80077792 Score = 145 bits (160), Expect = 2e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9813 GTCAATAAGCCAAGTCATTATCAAGGAGAATATGGACTTGAAGCTATTGCTGTCATTGAT 9872 || || || ||||| |||||||||||| | | || |||||| ||||| || ||||| Sbjct 30101674 GTAAACAAACCAAGCCATTATCAAGGATCAAAAGGTCTTGAAAGTATTGAAGTGATTGAC 30101615 Query 9873 AACTTCATGGGTGATTTAGCCGGTAAAGCGTCGTGGGCATGGGGGAATATGATCAAATAT 9932 ||||| || || || | | || || || ||||| ||||| || ||||| ||| Sbjct 30101614 AACTTTATTGGCAATCTGCCAGGGAAGGCAGCGTGGTGCTGGGGCAACGCAATCAAGTAT 30101555 Query 9933 GTTCTCCGTTTTCAGAAGAAAAATGGTCTTGAAGACCTTAAAAAAGCAAGAAAGAACCTT 9992 | || ||||| || ||||||||||||||||| ||||| || |||||| | ||||||||| Sbjct 30101554 ATGCTTCGTTTCCAAAAGAAAAATGGTCTTGAGGACCTGAAGAAAGCACGCAAGAACCTT 30101495 Query 9993 GACTGGTTGATTGAAGAAATGGA 10015 || ||||||||||| || ||||| Sbjct 30101494 GATTGGTTGATTGAGGAGATGGA 30101472 Score = 122 bits (134), Expect = 2e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 7063 TTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGACAAAAAGAAGCTGATTTT 7122 |||||| | ||||| || |||| ||||| | |||| |||| || || ||||||||| Sbjct 59386077 TTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTT 59386018 Query 7123 ATTAATTGTGTGATGTGGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAAAAGGGG 7182 || ||| ||||||||||| ||| ||||||||| | | || ||| ||||||| || Sbjct 59386017 ATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGC 59385958 Query 7183 CATCTGATTGCGATAACAGGCCGCATCCAAACCCGTAACTATGAGAATCAACAAGGTCAA 7242 ||| || | ||| |||||||| ||||| || |||| || || || || ||||| ||| Sbjct 59385957 TCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATAACCAGCAAGGACAA 59385898 Query 7243 CGTGT 7247 ||||| Sbjct 59385897 CGTGT 59385893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123167963434500