Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25 672 0.0 seq22 118 2e-21 seq13 111 3e-19 seq20 96.9 7e-15 >seq25 Length=32766887 Score = 672 bits (744), Expect = 0.0 Identities = 1122/1602 (70%), Gaps = 60/1602 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| | |||| |||| | | ||| | |||||||||||||| ||||||| Sbjct 10519894 GATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCC---GCGCTCC 10519950 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 10519951 GTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGG 10520010 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 10520011 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 10520070 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || |||||||||| || |||||| ||||||||||||||||| | ||| Sbjct 10520071 GACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTT 10520130 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||| | | | |||| || || |||||||| Sbjct 10520131 TCCTTCAGCAGCTTCCAGTCCCAAAGGTC-----GGTCGGCGTCTTCT----CCCACATG 10520181 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||||||| ||||||||| ||| |||||| ||| | Sbjct 10520182 TCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 10520240 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| |||| ||||| | || |||||||||| ||||||||||||||| ||| Sbjct 10520241 CTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTG 10520300 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC-CATCATCATGAAGAC 244482 |||| | | || | ||| | | | | ||| ||| |||| ||||| |||||| | Sbjct 10520301 GATGTTGA-GCAGCTGAGCTT-CGGGACTTTCGAAAGGG-TGCCGCATCAGGATGAAGGC 10520357 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | ||| Sbjct 10520358 GTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGC 10520417 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 |||||| || ||||| ||||| |||||| | |||||||||||| ||| | Sbjct 10520418 TTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTT 10520477 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | |||| ||||||| || |||||| | || || || ||| | | Sbjct 10520478 GGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----T 10520522 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || || ||||||||||| | |||||||||||||||||||||||| ||| | |||| Sbjct 10520523 GACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGT 10520582 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| || | ||| ||||||||||| |||||||||||||||||||||| ||| || || Sbjct 10520583 GTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 10520642 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| |||||| |||||||||||||||||| |||| |||||| ||| ||||| Sbjct 10520643 GCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGA 10520702 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 ||| || | || |||||| | | ||||| ||| ||| | | || || Sbjct 10520703 CTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTTTTCACTCTCCCTTCCTT 10520762 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 ||| || |||||| || ||||||||| |||||| |||||| || || || || Sbjct 10520763 CTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACA 10520822 Query 244963 CGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||| ||| ||||| | ||| || | | || || |||| |||||| |||| Sbjct 10520823 C-TCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGT 10520881 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | |||||||| | ||| | ||| ||||| |||| |||||||| ||| || ||||||| Sbjct 10520882 CAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 10520941 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 || ||||||||| ||||| || ||||||| |||||| ||||||| || | |||| || Sbjct 10520942 TCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGG 10521001 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATG 245197 | ||||| | ||||||||| ||||||| || | | |||||| |||| | | Sbjct 10521002 CCCCGGGTCTCTTGTTGCCGCCCTGGT----CAACGTACCGAGCGGTGTTGTTGTAAACT 10521057 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | ||||| | ||||| |||| |||||||||||| ||||||| ||| | Sbjct 10521058 CTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTC 10521117 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 | || | ||| | | || ||| | ||||| ||| |||||| ||||| ||||| Sbjct 10521118 GATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCAC 10521177 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| ||||| || |||||||| ||||||| |||||| ||||| Sbjct 10521178 TGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAA 10521237 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 10521238 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC 10521297 Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTGGA 245495 | | || ||| |||| ||| |||| || ||||||||| | ||| ||||||| Sbjct 10521298 CA-CTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATG-TCTCGCCCGTGGA 10521355 Query 245496 TCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 || | | ||||||||| ||||||| || ||| | || | || || Sbjct 10521356 TCCCAACCGACACCCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTCCCGTTG 10521411 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||| ||||| || |||||||| || ||| Sbjct 10521412 ATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAG 10521453 >seq22 Length=23629796 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| |||| || ||||| ||||||||||| || | |||||| Sbjct 3940846 GGAGAGAGAGTGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 3940905 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||||| ||| ||| ||| | ||||||||| || |||||| ||||| || Sbjct 3940906 TCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCAGCAACGAGCT 3940964 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 3940965 CATCAGCCGAGACGAGG 3940981 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| | | ||||||||| ||||| | || ||||||||||||||||| ||||| Sbjct 3940477 TTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATG 3940536 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||||| | ||| || |||| |||||| ||||||| | Sbjct 3940537 GAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCCCAGC 3940596 Query 42597 GAG 42599 ||| Sbjct 3940597 GAG 3940599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 3940682 CTGTTCAACGCCATCCAGACGCTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTCAAC 3940741 Query 42669 TGGATCG 42675 ||||||| Sbjct 3940742 TGGATCG 3940748 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 3941740 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 3941799 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 3941800 GGTCGGGGAGTACCAG 3941815 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 3948841 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 3948782 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 3948781 GGTCGGGGAGTACCAG 3948766 >seq13 Length=27080333 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | |||||||| |||||||| || ||| |||||||||||||||| | || || Sbjct 15278732 GTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 15278791 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 |||| ||| ||||||||||||||||||||||||| | ||| || ||||| ||| Sbjct 15278792 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGC 15278851 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 | ||| || | || |||||| | | |||||| ||| Sbjct 15278852 GACTCGATGATGGCGTACCAGAGCTGCTGAGCCTTCACC 15278890 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| |||| |||||||| || Sbjct 15279193 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 15279252 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 15279253 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 15279312 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 15279313 GTACACAGAGAAGGCCCCTGG 15279333 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 15277100 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTATGCCTCAATG 15277159 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| |||| ||||| || ||| || || ||||| || | || |||||| Sbjct 15277160 GACTCGTTGTTACCCAAGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAAAAGCAGA 15277219 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 15277220 CTGTTCCTCACACCGTGCCT 15277239 >seq20 Length=26302745 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||| || |||||||| ||| | ||||| Sbjct 12394205 GGGGAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCT 12394146 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 12394145 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGCCTTACCTACTCCAACGAACT 12394087 Query 42815 CATCAGCAGGGACGAGG 42831 ||| |||||||| |||| Sbjct 12394086 CATTAGCAGGGATGAGG 12394070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338904894000