Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq18 188 2e-43 >seq18 Length=80077792 Score = 188 bits (208), Expect = 2e-43 Identities = 235/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 41504 ATGCGGCGCGAGACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATC 41563 ||||| || |||||||| || | || | ||| ||||| | || || ||| |||| Sbjct 73145507 ATGCGTTCCGCGACGTCGTTAATCACCCCCAACACACCCACCACGGGCGTCGGGAGGATG 73145448 Query 41564 GGCACGTCGCCGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGG 41623 || | |||||||||||| ||||| || || || || || | ||||| ||||||| Sbjct 73145447 GGTTCCGTGCCGGTCTGGTTATAGAAGGACACATTGCCACCTGACACCGGAATGCCCAGT 73145388 Query 41624 GCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATGACCTCGGGA 41683 | ||||||||||| ||||||| ||| | || || |||||||||||| || || || Sbjct 73145387 TCAGCACAGCCGTCGGCAAGCCCGTGCACAGCCTCACGGAACTGCCACATCACGTCCGGG 73145328 Query 41684 TTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACC 41743 |||||||| ||||| ||||||||||||| ||| ||||| || ||| |||||||| Sbjct 73145327 TTCTCCGGCGAGCCAAAGTTCAGGCAGTTGGTCACCGCGACAGGTGTGGCACCGGTGACA 73145268 Query 41744 GCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGG 41803 || || || ||||| ||||| || | || | | | ||||||| || ||| ||||||| | Sbjct 73145267 GCAACATTCCGGTACGCCTCCGCCAACGCCAACCGCGCGCCCGTGTTCGGATCGAGCTTG 73145208 Query 41804 CAGTAGCGGCCGTTCGCGTCGG 41825 |||||| || ||||||| Sbjct 73145207 GTGTAGCGTCCCGAGGCGTCGG 73145186 Score = 131 bits (144), Expect = 5e-26 Identities = 181/252 (72%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATT---GGCCTGATAGACGGCATCGAACACGGT 42708 |||||| ||| || |||||||| ||||| ||| | | | | ||| || ||||| Sbjct 66694955 GCCCACGCACAGCGCATTGACCAGTGGATTCCCGGCGTAAGATTC---ATCAAAAACGGT 66694899 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 |||||||||||||||||||| || ||||||||||| || || | || || Sbjct 66694898 TTCGCCGCCGATGTTCGGCAGGCCCAGGCAGTTGCCATAACCGCCCACACCATCAACCAC 66694839 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 || ||| || ||| || || ||| ||||||| | |||||| ||||| ||||| Sbjct 66694838 ACCCGGCAGCACACGCTTGGTATCCGGGGCGTCGGCAGGGCCGAAACGCAGCTGATCCAT 66694779 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 ||||| || || || || ||||| | |||||||| || || ||||||||||||||||| Sbjct 66694778 CACCGCTACTGGCCGCGCACCCATCGCCATGATGTCACGCACAATGCCGCCCACACCCGT 66694719 Query 42889 CGCCGCGCCCTG 42900 || || ||||| Sbjct 66694718 GGCGGCACCCTG 66694707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148246355989350