Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_009799.3 Length=42972 Score E Sequences producing significant alignments: (Bits) Value seq18 111 4e-20 >seq18 Length=80077792 Score = 111 bits (122), Expect = 4e-20 Identities = 240/356 (67%), Gaps = 10/356 (3%) Strand=Plus/Minus Query 16444 GGGCTCTAAGTCCCTCTTCCAAGGACTCGCTGCAGCGCTCGCAGCTAAGATACCTCAGTT 16503 |||| | |||||||| || || ||| | || || ||||| | ||| | | || | ||| Sbjct 61591907 GGGCACAAAGTCCCTGTTTCAGGGATTGGCGGCGGCGCTATCGGCTGCGTTTCCCCCGTT 61591848 Query 16504 CGCCCCGCTTATCGTGGCAGCCGGTGTATTCCTCGGTGACCTATCCGGTCAAGCTCTACA 16563 || || | || | ||| || || | ||||| || ||| | || | || | Sbjct 61591847 TGCGCCTTTGATTGCGGCGGCTGGCGCGTTCCTTGGGGACGTTGTTGGGGCTTCGCTCAA 61591788 Query 16564 AGACAAGCTATTCGCATGGAACGAGTTTGAGGACGCGGTACGACGAGAAGCACACGGATT 16623 |||||||| || || |||||||||||| |||||||| ||||| || || || || Sbjct 61591787 GGACAAGCTTTTTGCCTGGAACGAGTTTACCGACGCGGTGCGACGTGAGGCGCATGGGCG 61591728 Query 16624 CTACCGCTACCGCGACGTAGTAGGCAACGGCGACGGCTGGACACTAAGCGCATGGCAGCA 16683 | | ||||||||| | || || ||||||||||||||| || || |||||||| Sbjct 61591727 TTTCGCCTACCGCGATGCGGTGGGTTCCGGCGACGGCTGGACGCTTTCGGCGTGGCAGCA 61591668 Query 16684 AGGTTTCCAGATGCTCAAAGAGGGCGCGGGCATGATCTCAGGCTCATTCACAGGC----G 16739 || || |||||||| |||||||||| ||| || | ||| ||| | | Sbjct 61591667 GGGGTTTCAGATGCTGGCGCAGGGCGCGGGAATGGTCAGCGTGGGGTTC-CAGTCTTCTG 61591609 Query 16740 GGGAGAACCTCG-CCTACAAGTGGGGTCGAGACTTCCGCGCCGGGGATCAACAAGG 16794 ||| | ||| |||| ||||||| || || ||||| || |||||||| || || Sbjct 61591608 GGG----CGTCGCCCTATGAGTGGGGCCGTGATTTCCGTGCGGGGGATCAGCAGGG 61591557 Score = 80.6 bits (88), Expect = 7e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 15828 TACCGTGACTTTAGAGCCGGGGACTCGCTGCGCGTTATCAAGGAATACATGCTTGTTAAC 15887 ||||||||||| | || || || || |||| || |||||||| || ||||||||||| Sbjct 71916721 TACCGTGACTTCCGGGCTGGCGATTCCTTGCGAGTCATCAAGGAGTATCTGCTTGTTAAC 71916780 Query 15888 CTCATGCGCGAGTTCCAACCCAACGGTATCAAAGGCTGGAACATGTGGAACGCCTCGA-- 15945 |||||||| || ||||| || || ||| | || ||| || ||||| | |||| Sbjct 71916781 CTCATGCGGGATTTCCAGCCTCGCGCTATTACCGGTTGGGACTTGTGG---TCTTCGACT 71916837 Query 15946 GCTGGGCGAGC-GTAAATCAAACGCTTTGGCCCGCTATGGT 15985 || |||| || || | |||||||||||||| || || Sbjct 71916838 GCATGGCGGGCGGTGTCCCCGACGCTTTGGCCCGCAATAGT 71916878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137388759212700