Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25 158 1e-33 seq13 95.1 1e-14 seq18 91.5 2e-13 seq22 84.2 3e-11 >seq25 Length=32766887 Score = 158 bits (174), Expect = 1e-33 Identities = 893/1401 (64%), Gaps = 48/1401 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||||||||| Sbjct 10520014 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 10520073 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || | || |||| Sbjct 10520074 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10520133 Query 114062 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | |||||| | || | | |||| | || ||||| || ||||| Sbjct 10520134 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTGG 10520190 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 ||||| || | | | | ||||| ||||| | |||||||| ||||| | | || Sbjct 10520191 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 10520250 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 10520251 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGC 10520310 Query 114239 GCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 114296 || || ||| ||| | | || | | | || || || || | || || |||| Sbjct 10520311 AGCTGAGCTTCG--GGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 10520368 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACG 114355 | ||||| |||| || || || | || | | | || || | ||| || || Sbjct 10520369 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCG-GCTTCGGGAACC 10520427 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 10520428 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 10520487 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 ||||| | | | || ||| | || |||| |||| ||| | |||||||| Sbjct 10520488 GCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATG 10520544 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || ||||| || || || | ||| ||||| |||||||| | | ||||| || Sbjct 10520545 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAG 10520604 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 | || | ||| |||||||||| ||||| || || ||| |||| || || ||| Sbjct 10520605 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10520664 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 114655 ||||| |||||||| || ||||| || || || ||||||| || || || | ||||| Sbjct 10520665 TTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 10520724 Query 114656 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 114714 | | ||| || ||| || ||| ||| |||| ||| || || |||||||| Sbjct 10520725 TGCTGCGCCTT-CACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTT 10520783 Query 114715 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAG 114773 || ||||| || ||| | ||| ||||| || || ||||| || | | | Sbjct 10520784 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACATCAAGG 10520842 Query 114774 ACCATTGACCACCCTCCTCAACACGCT--TCATGAAGAGGTCTGGGATCCAGAGAGCTGA 114831 |||| | || | ||| ||| || ||||||| ||||| |||||||| | || | Sbjct 10520843 ACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTA 10520900 Query 114832 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| || || | | | ||| || | | || || || || ||||| |||| Sbjct 10520901 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 10520959 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGA 114946 | | | || |||||| || ||||| |||| |||| | ||| || | | Sbjct 10520960 CGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG- 10521018 Query 114947 CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 || |||||| || |||| || ||| || | || | ||||| || | | || Sbjct 10521019 CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10521078 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGA--CA--TCATGG 115060 | || | ||| || || || || || ||| | | || || || ||| | Sbjct 10521079 TTGGAGTTGCCGTTGGTGCCTGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCG 10521136 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 || || || || || || |||| || || ||||||||| | | || || || Sbjct 10521137 C----CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCG 10521192 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 ||||| || ||||| ||| |||| | |||| |||||||| || |||| || ||| Sbjct 10521193 TAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGC 10521252 Query 115181 CTTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 115237 | ||| || || |||||||||||||| || | |||||| ||||| || | | ||| Sbjct 10521253 C--GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGAC 10521309 Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297 | | ||||||||| | | ||||| |||||| |||||| || || | ||| ||| Sbjct 10521310 AGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACC 10521369 Query 115298 CGCATAAACATGTATTGGGGT 115318 | ||| | ||||| || ||| Sbjct 10521370 CTCATGAGCATGTGCTGCGGT 10521390 >seq13 Length=27080333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||| ||||| | |||| |||||||||||||| ||||| ||||| Sbjct 15277133 TAGATGTTGCTTGTGTATGCCTCAATGGACTCGTTGTTACCCAAGATCTGGGCAGTGGAA 15277192 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || || ||||| Sbjct 15277193 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15277224 >seq18 Length=80077792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| ||||| || || || || | ||| ||||||||||| || Sbjct 51266047 ATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGAACATCTGAACGGTTCGTCGCAGC 51266106 Query 10849 GATGACAACGATGCCCGTCTCGTTA-TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907 ||| || | ||| ||| || | ||||| |||||||| ||| |||||||||| || | Sbjct 51266107 GATAACGATGAT-CCCTTCATTTCCCTCAAAACCATCCATTTCAATCAAGAGTTGGTTCA 51266165 Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGG-CATACCACCCGCACTGCGTTGCTTACCGACG 10966 ||||||||| ||||||||||| | | || || ||| ||||| ||| || Sbjct 51266166 AGGTTTGTTCACGTTCATCATTTCCTCCACCTAGG-CCAACACCACGTTGGCGACCAACA 51266224 Query 10967 GCGTCAATTTCATCGATGAAAACGAT 10992 || || ||||||||||| || | ||| Sbjct 51266225 GCATCTATTTCATCGATAAAGATGAT 51266250 >seq22 Length=23629796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| ||| |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 3940981 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3940922 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | || ||||| ||||||||||||||||||||| ||||| | Sbjct 3940921 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3940862 Query 126186 C 126186 | Sbjct 3940861 C 3940861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353413327000