Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13 111 2e-19 seq18 102 9e-17 seq8 95.1 1e-14 seq24 93.3 5e-14 seq11 89.7 6e-13 seq2 89.7 6e-13 seq22 86.0 7e-12 seq6 86.0 7e-12 seq25 82.4 8e-11 seq1 82.4 8e-11 >seq13 Length=27080333 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || | ||| || || | || || ||||| || ||||| || Sbjct 11060556 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 11060615 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | || |||||| ||| ||| || |||| || Sbjct 11060616 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 11060675 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| | |||||| || | |||||||||||||| || || ||||| ||| Sbjct 11060676 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 11060735 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 11060736 AAGATTTGCAT 11060746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | ||| || || | || || |||||||| || || || Sbjct 11062566 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 11062625 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||| ||| ||| || || | | Sbjct 11062626 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 11062685 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || | ||||| || | |||||||||||||| || || || || || Sbjct 11062686 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCAC 11062745 Query 42197 AAAGATTTGCATTTT 42211 |||||| ||||| || Sbjct 11062746 AAAGATCTGCATCTT 11062760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 56995 ATGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||||||| || |||| || | | |||||||||| ||||||||||||||||||||| Sbjct 20829156 ATGAAAAAGTTGAGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 20829215 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 |||||||||||||||||| |||||| ||| Sbjct 20829216 GGATACTCACCACTATACTAACGAGGAGTGA 20829246 >seq18 Length=80077792 Score = 102 bits (112), Expect = 9e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 ||||| | || || || | ||| | |||| || | ||| |||||| || |||||| Sbjct 51870037 ATTTACTGGCCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTG 51870096 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || || | ||| || || | || || |||||||| ||||| || || || | ||||||| Sbjct 51870097 TAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 51870156 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 || | || | || |||||| ||| || || |||| || | | ||||| || Sbjct 51870157 TCAGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTG 51870216 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 51870217 GGCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||||||||||||||||||||||||| ||||| Sbjct 49717158 AAACTTCACTCCCCGTCGGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACT 49717099 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||| ||||| |||||| Sbjct 49717098 CACCACTGTACTAACGAGGA 49717079 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47538332 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47538273 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 47538272 TACTAACGAGGA 47538261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47538964 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47538905 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 47538904 TACTAACGAGGA 47538893 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47539490 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47539431 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 47539430 TACTAACGAGGA 47539419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47535984 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47536043 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 47536044 ATACTAACGAGGA 47536056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47536775 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47536716 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 47536715 ATACTAACGAGGA 47536703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47537282 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47537223 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 47537222 ATACTAACGAGGA 47537210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 47537789 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 47537730 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 47537729 ATACTAACGAGGA 47537717 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||| |||||||||||||||| |||| ||||| ||||||| Sbjct 73132835 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTTACCACTA 73132776 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 73132775 TACTAACGAGGA 73132764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct 58017612 AATCGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCACCACTATACTAACGAGGA 58017670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct 67973206 AATCGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCACCACTATACTAACGAGGA 67973264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| |||||||||| |||||||| | ||||| Sbjct 30646356 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCATGACAGGCAGGGATACT 30646297 Query 57059 CACCACTATACTACCGAGGATTGAATATA 57087 ||||||| ||||| |||||| ||||||| Sbjct 30646296 CACCACTGTACTAACGAGGA--GAATATA 30646270 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||| ||||||||||||||||| ||||| Sbjct 63686997 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTTTCCCGCGTGACAGGCGGGGATACT 63686938 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||| ||||| |||||| Sbjct 63686937 CACCACTGTACTAACGAGGA 63686918 >seq8 Length=30223615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 29057111 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 29057170 Query 57059 CACCACTATACTACCGAGGATTGAATATATA 57089 ||||||||||||| |||||| ||| ||||| Sbjct 29057171 CACCACTATACTAACGAGGA--GAACATATA 29057199 >seq24 Length=19721749 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 2786323 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 2786264 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 2786263 TATACTAACGAGGA 2786250 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 16613643 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 16613702 Query 57059 CACCACTATACTA 57071 ||||||||||||| Sbjct 16613703 CACCACTATACTA 16613715 >seq11 Length=33594876 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 4790842 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 4790784 >seq2 Length=25664663 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 22690457 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 22690399 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 8170420 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 8170479 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||| ||||| |||||| Sbjct 8170480 CACCACTGTACTAACGAGGA 8170499 >seq22 Length=23629796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 20444428 AAACTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 20444487 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||| ||||| |||||| Sbjct 20444488 CACCACTGTACTAACGAGGA 20444507 >seq6 Length=22489619 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||| ||||||||||||| ||||||||||| Sbjct 21970899 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGGGATACTCACCAC 21970957 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 21970958 TATACTAACGAGGA 21970971 >seq25 Length=32766887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| |||||||||||||||||||| ||||| Sbjct 31102289 AAACTTCACTCCCCGTCGGGGAATCGAACCCCTGTCTCCCGCGTGACAGGCGGGGATACT 31102230 Query 57059 CACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 31102229 CGCCACTATACTAACGAGGA 31102210 >seq1 Length=30011118 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 21638672 AAACTTCACTCCCCGTCGGGGAATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACT 21638731 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||| ||||| ||||| Sbjct 21638732 CACCACTGTACTAATGAGGA 21638751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212630246000