Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_010353.1 Length=35543 Score E Sequences producing significant alignments: (Bits) Value seq18 201 3e-47 >seq18 Length=80077792 Score = 201 bits (222), Expect = 3e-47 Identities = 484/719 (67%), Gaps = 19/719 (3%) Strand=Plus/Minus Query 1310 TGAAACGCTACCCAACTGAAAAACAAGCTGAGAAAATGCAACTTGAGATCGACAAACTCA 1369 ||||||| || || |||| ||||||||||| ||| | | ||||| || || ||||| | Sbjct 30100224 TGAAACGATATCCGACTGCTAAACAAGCTGAAAAACTTGAGCTTGAAATAGAGAAACTTA 30100165 Query 1370 AGGCCCAAGTCGGTGGCGATGAGGGTCAAGATGAGAAAATCGCTG-GTTTCCTAAACCTC 1428 | | ||| | ||| ||||| | || || || || | | | |||| |||| || Sbjct 30100164 AATCTCAAATTGGTATGGATGACGAGCATGACGATAAGCTTGTAGAGTTTGCTAAGGCTT 30100105 Query 1429 ATCAAAGGAGCTGTAAGCGATGGACTTGAGTAAGCTCTATACCAAGAGACAGTTAGAAGT 1488 | | ||| ||| | | ||| || |||||| || | ||||| | | || | |||| Sbjct 30100104 -TGAGAGGTGCTTTTA---ATG-ACA--AGTAAGTTC-ACACCAAAACA-AGA-ACAAGT 30100055 Query 1489 GCTTAATTACATCTGGAATCATGATTGGTTTATCTGTGGGCTTCATGGCGCTAAACGTGC 1548 |||| | | || |||| | ||||| || || | ||||| || || ||| | Sbjct 30100054 CCTTAGACGAGTTTTAAACGATGACTTCTTTATTTGCGGTTTGCATGGTGCAAAGCGTTC 30099995 Query 1549 TGGTAAGACTGTAGTTAATAACGACACTTTCGTAACCGAGTTAAGCCGTGTCAGAAAGAT 1608 ||||||||||| | ||||| ||| | | || | | || |||| || Sbjct 30099994 AGGTAAGACTGTTTTGAATAATATGGTCTTCCTGAATGAAATTGATAGAGTTAGAACAAT 30099935 Query 1609 TGCTGACTATTTAGGTGTAGATGAACCTATCTATATCTTAGCGGGTACATCGTCAACGTC 1668 ||||| | |||| | |||||||| || ||||| || || || || || ||||| || Sbjct 30099934 AGCTGATAAGTTAGACATTGATGAACCGATGTATATTTTGGCTGGGACGTCTTCAACTTC 30099875 Query 1669 TATACAGAACAACGTGCTGCAAGAACTTTATAATAAATACGGATTTGAGCCCAAGTATGA 1728 ||||| || || | | |||||||| ||||| | | | ||||||| || ||||| Sbjct 30099874 GATACAAAATAATATTATCCAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGA 30099815 Query 1729 TAAGCATGGGTCTTTCGTGTTTTGTGGTGTAAAAGTCGTGCAGGTTTACACTGGATCAAT 1788 || || || | || |||| || || || || | || ||||| ||||| ||||| Sbjct 30099814 CAAACACGGAGCGTTTACTCTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAAT 30099755 Query 1789 TAGTGGTCTTAAACGTGCCCGTGGTTTCACAGCGTTCGGCGCTTATGTTAATGAGGCATC 1848 | ||| | ||||| || |||||||||||||| || || || ||||| || |||||||| Sbjct 30099754 TTCAGGTTTAAAACGAGCTCGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATC 30099695 Query 1849 ACTTGCTAACGAGGTTGTTTTCAAGGAGATTATATCACGGTGCTCTGGCGAAGGTGCTCG 1908 | || || || || ||||| || || || ||||| || || || || ||||| || Sbjct 30099694 GTTGGCCAATGAACAAGTGTTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACG 30099635 Query 1909 TGTGGTTTGGGATAGCAACCCAGATAATCCTAATCACTGGCTTAACCGAGACTACATTGG 1968 | ||||||||||| |||||||| | || | |||||||| | || || || || Sbjct 30099634 GATTGTTTGGGATAGTAACCCAGACATCCCGACCCACTGGCTCAGACGGGATTATAT--- 30099578 Query 1969 CAAGAAT---GACGGAAAGATTATAGA-TTTCAGCTTCAAGCTAGACGATAACACTTTC 2023 ||| | |||| | ||| ||||| ||||| ||||||||||| ||||| || ||| Sbjct 30099577 CAACTCTGGCGACGATATGATCATAGACTTTCA-TTTCAAGCTAGATGATAATACATTC 30099520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113615966270250