Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_010945.1 Length=39136 Score E Sequences producing significant alignments: (Bits) Value seq18 1216 0.0 >seq18 Length=80077792 Score = 1216 bits (1348), Expect = 0.0 Identities = 921/1073 (86%), Gaps = 13/1073 (1%) Strand=Plus/Minus Query 2955 AAAGACTTTCAAGAAATGGCTCTTACAATCTCGGCTCTTGAAAAGGTTAAAGAAAACGAA 3014 ||||| ||||||||||||||||||||||||| | ||||||||||||| ||||| |||| Sbjct 30114583 AAAGATTTTCAAGAAATGGCTCTTACAATCTTAGTTCTTGAAAAGGTTGAAGAAG-CGAA 30114525 Query 3015 AGAAGCTAGGGTAGCGTAGAGGGGTGCGGTTCCCCTCCTAGTTATTGCTCTGAAGAGCGA 3074 |||||||||||||||||||||||| || |||||||||||| |||||||| | |||||| Sbjct 30114524 AGAAGCTAGGGTAGCGTAGAGGGGCGCAATTCCCCTCCTAGCTATTGCTCATA-GAGCGA 30114466 Query 3075 AAATAATAGAAAGGAGTAGAAAGATGCCAGGACAAAAAGAAAAATACCACGATAGACGTG 3134 | | || ||||||||| ||||||||| ||| |||||||||||||||||||||||||||| Sbjct 30114465 ATA-AAGAGAAAGGAGAAGAAAGATGTCAGAGCAAAAAGAAAAATACCACGATAGACGTG 30114407 Query 3135 GAAGACCTGATGGATTGAAAGTTGAAAAAGTTATTCACCTTTCAATATTGAGAGGTGAAG 3194 | || ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 30114406 GTAGGCCTGATGAATTGAAGGTTGAAAAAGTTATTCACCTTTCAATTTTGAGAGGTGAAG 30114347 Query 3195 GGACTGAGTCGGATAAAATTCGAATTGTAGAGCAGTATTACAATATGGATGGCGTTCTAA 3254 | ||||| |||||| |||||| |||| |||||||||||||||||||| ||| ||||| Sbjct 30114346 GAACTGAAGCGGATAGTATTCGAGTTGTGGAGCAGTATTACAATATGGACGGCAATCTAA 30114287 Query 3255 TATTTGAGTTAGATCCTTGTTCTCCACATTATCAAGATTTTTTGGGTTTGCGCTGATCTT 3314 ||||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||||| Sbjct 30114286 TATTTGAATTAGATCCTTGCTCTCCGCATTATCAAGAATTTTTAGGCTTGCGTTGATCTT 30114227 Query 3315 GTTTATCTTTATCTAAATCCAAAATATCTTGTAGTAATTGCTCGTTGTCGTGACGCTCAA 3374 |||||||||| || ||||| ||||||||||||||||| |||||||| || || || |||| Sbjct 30114226 GTTTATCTTTGTCCAAATCTAAAATATCTTGTAGTAACTGCTCGTTATCATGGCGTTCAA 30114167 Query 3375 TATACCATTTTTGCATAAGTAATTCTATAAACTTAAGCAACTTGTGAGCCTCGTTCGGTT 3434 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 30114166 TATACCATTTTTGCATAAGTAATTCTATAAACTTTAGCAACTTGTGAGCCTCATTCGGTT 30114107 Query 3435 CAATGTCTACTATAAGATTTATATCTTTTTCTGGATGAGCGCCAATATTCCCAAGTTTTC 3494 |||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 30114106 CAATATCCACTATAAGATTTATATCTTTTTCTGGATGAGCTCCAATATTTCCAAGTTTTC 30114047 Query 3495 GTAAGGCATCTAGCACCTTTTTAGTACTTGGGTCAACAAGCTCTTTTAAAGCATCTATCT 3554 ||| ||||| || || |||||||| ||||||||||| |||||||||||||||||||| Sbjct 30114046 GTAGAGCATCAAGTACATTTTTAGTGCTTGGGTCAACTGACTCTTTTAAAGCATCTATCT 30113987 Query 3555 CATCTACTAACCTTGCTTTAGAAATTCCCCAAAAATCTCTAATCATTCCTTGTAGACAAC 3614 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30113986 CATCTACTAATCTTGCTTTAGAAATTCCCCAAAAATCTCTAATCATTCCTTGTAGACAAC 30113927 Query 3615 GTCTAGAGAGAGTAGCAGAAGCTTTGGGGCTGAGATTTAAGATAGCATGAGCTTCTTCAT 3674 |||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 30113926 GTCTAGAGAGGGTTGCAGAGGCTTTGGGGCTGAGATTTAAGATAGCGTGAGCTTCTTCAT 30113867 Query 3675 AATCACTTATTATAGTCTGTGGAATGTATTCCGGGTAAACTTTAGCAAGTGAAATTGGAT 3734 |||||||| |||||| ||| || ||||| || || || ||||| || |||||||| |||| Sbjct 30113866 AATCACTTCTTATAGCCTGAGGGATGTAGTCTGGATAGACTTTTGCGAGTGAAATAGGAT 30113807 Query 3735 TGAAGTGCATAATGCGATTTGGAAATTGACTTCCTACGCCCACGATGTCGATTGAAACTT 3794 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30113806 TGAAGTGCATAATACGATTTGGAAATTGACTTCCTACGCCCACGATGTCGATTGAAACTT 30113747 Query 3795 TATGGCAATTTGGACAGTTTAAGCTTTGAATCAACACTTCATCTTTC---TTTGCTTCTG 3851 |||| || |||||||| || | |||| || | || || ||| ||| | || Sbjct 30113746 TATGACAGTTTGGACAATTCATTGTTTGTATTGTTATTTTGTCGTTCAAATTTTCCTCAA 30113687 Query 3852 GAGTAATGCGGTGGGGCACATTGTCTAAGAAATAATGGCTCTT-TTCTCGATAGGTATCG 3910 ||| | || | || || || || | | |||| |||||| | |||||| Sbjct 30113686 CCTTAA--CATATGGACGACGAATCCAA-AAGTAGT-GTTCTTCTTCTCGGAATGTATCG 30113631 Query 3911 CCATGATACGGAACAGGGCACCCGCAGAATAAACAGAATAGTTGATTAGAATCCATAAAT 3970 || | ||||| | || ||||| ||||| ||||||||||||||||||||||||| Sbjct 30113630 TAGTGGTTTGGAACTGAACAACCGCAAAATAAGCAGAATAGTTGATTAGAATCCATAAGA 30113571 Query 3971 TTTCTCCAGTAGTTTTTATTTTGATTATACCACATTTGAAAGGAGGT-AGGAA 4022 |||||||| | | ||||||||||||||||||| |||||||||| ||| ||||| Sbjct 30113570 TTTCTCCAATTG-TTTTATTTTGATTATACCATATTTGAAAGGGGGTGAGGAA 30113519 Score = 527 bits (584), Expect = 2e-145 Identities = 419/505 (83%), Gaps = 5/505 (1%) Strand=Plus/Minus Query 2443 TCTGAGACTTCAGTTTTCTTCGTATCTTCTTCGTTTTTCT-GTTCGTTCAATTGTCTTTT 2501 || || ||||| || |||||| || |||||||||| ||| |||||| | | ||| Sbjct 30115310 TCCGATACTTCGTTTATCTTCG-ATTTTCTTCGTTTCTCTTGTTCGTCGCGTAATTTTTC 30115252 Query 2502 AGCATACGTCAACACCTTAGCTTGTCTTGGAGGTTTTAGTTCATTATATATTTCTTGGAT 2561 ||| || || | || || ||| ||||| ||| |||||| |||||||||||||| || Sbjct 30115251 AGCGTATGTGATAACTTTTCTTTGCCTTGGCGGTGCTAGTTCGTTATATATTTCTTGAAT 30115192 Query 2562 TGTANNNNNNNNNNNNNNNNNNNNNNNNCTTATTTGAGGGAAAAGGTCATCAATCGAAAT 2621 |||| ||||||| || |||||||||||||| ||||| Sbjct 30115191 TGTAGATATGTTGGTAGATGAATCTTTTTTTATTTGCGGAAAAAGGTCATCAATTGAAAT 30115132 Query 2622 TCCAAAGGCATTTGCTAAATCAAACATTGTATCTTTTTTAGGAGACCTAATGCCTTTTTC 2681 || || ||||| |||||||||||||| || ||||| || |||||||| ||||||||||| Sbjct 30115131 CCCGAAAGCATTGGCTAAATCAAACATAGTGTCTTTCTTCGGAGACCTGATGCCTTTTTC 30115072 Query 2682 GTAATTACCAATAGCGTTCTTGCTGATCCCGATTTTAGAACCAAGTTCTTGTTGAGTCCA 2741 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 30115071 ATAATTTCCAATAGCATTCTTGCTGATCCCGATTTTAGAACCAAGTTCTTGTTGAGTCCA 30115012 Query 2742 ACCATTTTCAAGTCTATATTGTTTTATCTTTTCGCCAATAACACCAGCAATTTGTTCTTT 2801 ||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 30115011 ACCATTTTCAAGTCTGTATTGTTTTATTTTTTCACCAATAACAATAGCAATTTGTTCTTT 30114952 Query 2802 ATCCATAACCGCCTCTCCTTTCT-ATTTCTATAAGAAGATTATAGCACAAAAACCCACGA 2860 ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 30114951 ATCCATAACCGCCTCTCATTCCTGTTTTCTATAAGAAGATTATAGCACAAAAACCCACGA 30114892 Query 2861 AAGGAAAACTTTTT-TGTGTTTTTCGCaaaaaaaGCATTGACAGACCACGAAACGTGTGC 2919 |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 30114891 AAGGAAAACTTTTTGTGT-TTTTTCGCAAAAAAAATATTGACAGACCACGAAACGTGTGC 30114833 Query 2920 TATAATTAAATCAAGCTTAAGAAAA 2944 ||||||||||||||||||||| ||| Sbjct 30114832 TATAATTAAATCAAGCTTAAGGAAA 30114808 Score = 394 bits (436), Expect = 2e-105 Identities = 227/233 (97%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 4010 AAGGAGGTAGGAACGTGCAAATTTATTTGTATCAACTAAGAAAAGAAAAAGGTATCTCAC 4069 |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| Sbjct 30111936 AAGGAGGTAGGAACGTGCAAATTTATCTTTATCAACTACGAAAAGAAAAAGGTATCTCAC 30111877 Query 4070 AGAAAGAGTTAGCGCAAAAACTCGGGATTTCTGAAACAGCATACCGGCAGAAAGAAAAAG 4129 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 30111876 AGAAAGAGTTAGCGCAAAAACTCGGGATTTCTGAAACGGCATACCGACAGAAAGAAAAAG 30111817 Query 4130 GACAAAGTTCTTTTAAATCTGACGAGATGTTTATTATCGCTGATATTTTTGGGAAAGATA 4189 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 30111816 GACAAAGTTCTTTTAGATCTGACGAGATGTTTATTATCGCTGATATTTTTGGGAAAGATA 30111757 Query 4190 TTGGCGAAATTTTTTCGGATCCAAGACCACGAAACGTGGTTGTATAGAAAGGA 4242 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30111756 TTGGCGAAATTTTTTCGGATCCAAGACCACGAAACGTGGTTGTATAGAAAGGA 30111704 Score = 277 bits (306), Expect = 4e-70 Identities = 365/506 (72%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 31707 GGCGGGCCGAATATGCTCAGAAACTCTCGCGCAGACGAGGGCTTGCAGTATTGGGCAGAA 31766 || || |||||||||||| |||| || | |||||||| || ||| | || ||| ||||| Sbjct 30084750 GGTGGTCCGAATATGCTCCGAAATTCGAGAGCAGACGACGGATTGAAATACTGGACAGAA 30084691 Query 31767 GCTAATAATAGACTAGGCTTTACCTCTCACCAGTTCTACTTCAACGGTCAAAAGAAGATG 31826 || ||| | || ||||||| || || ||| | ||| |||||||| ||||| ||| Sbjct 30084690 GCGAATGGTCGATTAGGCTTCACGTCGCACGGTTACTATTTCAACGGCCAAAAACGCATG 30084631 Query 31827 TTTGAGTTGAGGCCTGGAGCAGTCGTTAAAAGTCCACGTTTCATCGTTAAACGCAATGCT 31886 ||||| | | || || |||||||||||||||||||| ||||| | || || ||| || Sbjct 30084630 TTTGAACTCAAACCAGGCGCAGTCGTTAAAAGTCCACGGTTCATTATCAAGCGAAATACT 30084571 Query 31887 GATTACACGCTGAATGTCCTTGGATTTGATAATAACTCTAAGTATTTTAGAGTTTATTTC 31946 ||||| || | ||| | | || ||||| || ||||| || |||||||| |||||| | Sbjct 30084570 GATTATACATTAAATATTTTAGGGTTTGACAACAACTCAAAATATTTTAGGGTTTATGTT 30084511 Query 31947 TGCAAGCGCAAAAAGGGATCAACAGCGGACTTTGAAGAAAAGCAACTGGTCTTTGACGGC 32006 || || ||| ||| || || | | || | | || | | ||| | || | || Sbjct 30084510 TGTAAACGCGTAAAAGGTTCTGGATCAGATTATCAACAGAGATTGCTGATATTCAATGGT 30084451 Query 32007 CAACCGCAATGGACAGACGGCCCTGTATTTAACAACGTCAAAACTGCTAAGAAGTCGTTT 32066 || || |||| ||||| | || || | |||| | ||| | ||||| || || Sbjct 30084450 CAGCCTAGATGGGTTGACGGTGCGGTTTTCGATAACGGTAGAACAGTCAAGAAATCCATT 30084391 Query 32067 AAATTTAACATCGGGGAATTTGATGACGGCTATCTTCAATTTGAGTATGACCGAAATAAC 32126 | ||| || | || ||||||||||| | ||||| ||||| ||||| ||| ||| || Sbjct 30084390 ACATTCAATGTAGGTGAATTTGATGAATGTTATCTGCAATTCGAGTACGACAAAAACAAT 30084331 Query 32127 CCCAATAAATGGGGCGGTCTATTTATGACCGAGTTGGATTTCTACGAAGGCACAACCGAT 32186 ||||| |||||||||||||| || ||||| ||| | ||||| |||||||| || || || Sbjct 30084330 CCCAACAAATGGGGCGGTCTGTTCATGACAGAGCTTGATTTTTACGAAGGTACGACTGAC 30084271 Query 32187 CGTAAATGGCAACCGGCACCCGAAGA 32212 || ||||||||||| || |||||||| Sbjct 30084270 CGCAAATGGCAACCAGCTCCCGAAGA 30084245 Score = 264 bits (292), Expect = 3e-66 Identities = 324/438 (74%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 15779 ATTTTGTCTGAAAGGTGGTGATGGATATTGTGTTGAATCAACGACAAAAGATATTTGCTA 15838 ||||||| ||| || ||||||||| |||| ||| |||||| |||||||||| ||||| | Sbjct 30100591 ATTTTGT--GAATGGAGGTGATGGACATTGGGTTAAATCAAAGACAAAAGATGTTTGCGA 30100534 Query 15839 GCGAATATCTGAGAACTGGTAACGCTTATCAGTCAGCGACATTGGCTGGATATAGTGAAG 15898 |||| ||| |||| || || || | ||||| || || | ||| || || |||||||| | Sbjct 30100533 GCGAGTATTTGAGGACAGGCAATGTCTATCAATCTGCAATATTTGCCGGTTATAGTGAGG 30100474 Query 15899 CTTATGCCAGAGGAAATGTTACAAAATTATTGGAAAATGAGAGCGTCAAGTCCTTTATCC 15958 |||| |||||| || | || |||||| | ||||||| ||| | || | || || | Sbjct 30100473 CTTACGCCAGAACAACCGCTAGTAAATTACTAGAAAATGCAAGCATTAAAACGTTCATAC 30100414 Query 15959 AAGCCGAGATGGACAAAATGCATGATAAAAACATCATGAGCGCTAGAGAGGC--TTTGAG 16016 || | || | | || ||||| ||| | ||||| |||| || | |||||| ||| | Sbjct 30100413 AAACAGAAACCAAAAAGATGCACGATGAGAACATTTTGAGTGCCAAAGAGGCCCTTTCAA 30100354 Query 16017 CATCTTGTCTGACATCGCTAGAGGTAAGCGGGATGAAGAAGTTTTGATGATGAATCCTGT 16076 |||| || ||||| || ||||| ||||| |||||||||||||||||||||||| || Sbjct 30100353 T-TCTT-TCAGACATTGCAAGAGGAAAGCGACTTGAAGAAGTTTTGATGATGAATCCGGT 30100296 Query 16077 GACTGGCGAAGTCGATAGGTTGACGAAAAAGGCTGACAACGCAACGGTTATCAAGGCTAT 16136 ||||| || || || || | ||||||||||| || || || |||||||| || || Sbjct 30100295 AACTGGTGAGGTGGACAGAGTTACGAAAAAGGCGGATAATAACACAGTTATCAAAGCGAT 30100236 Query 16137 ACAAGAAATCTTGAAACGCTATCCAACTGCTAAGCAAAGCGAGAAGATGGAACTTGAGAT 16196 | ||||| |||||||| ||||| |||||||| ||| || || | || ||||| || Sbjct 30100235 AGCTGAAATATTGAAACGATATCCGACTGCTAAACAAGCTGAAAAACTTGAGCTTGAAAT 30100176 Query 16197 TGAGAGATTGAAAGCTCA 16214 |||| | | ||| |||| Sbjct 30100175 AGAGAAACTTAAATCTCA 30100158 Score = 163 bits (180), Expect = 7e-36 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 4756 ATGCTTTGGAAAACAATATCTAAAAAGTTATCAGaaaaaaaTTGGACGATTTATAAACTT 4815 ||||||||| | | ||||||| |||| | ||||| ||||||||||| ||||||||||| Sbjct 30112123 ATGCTTTGGGAGAAAATATCTGAAAAACTTTCAGAGAAAAATTGGACAGTTTATAAACTT 30112064 Query 4816 TGCCTAAAAGCTGGAATAGGAACTGCAGGAATTTATCGGTTGAGAGATGGAGTAATCAAA 4875 ||| ||||||| || || ||| |||| ||||| ||||| || |||||||||| | | ||| Sbjct 30112063 TGCTTAAAAGCAGGTATCGGACCTGCTGGAATCTATCGTTTAAGAGATGGAGAAGTGAAA 30112004 Query 4876 GACCTACAGTTTGAAACGGTaaaaaaaaTAGCTGATGCACTGGGAATCAGCTTGGACGAG 4935 || | | ||||| || || || ||||| ||||||||||||| | ||||| | || || Sbjct 30112003 GATTTGTATTTTGACACAGTTAAGAAAATTGCTGATGCACTGGAAGTCAGCATAGATGAA 30111944 Query 4936 TTCAGATA 4943 || ||||| Sbjct 30111943 TTAAGATA 30111936 Score = 131 bits (144), Expect = 4e-26 Identities = 105/122 (86%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 1144 TTGCTTTTTACCTCATTCCTTGATAAAATGGGTATAGTAAAAAGGG--CTTTTTAATGCC 1201 ||| ||||||||||||| |||||||||||||||||| |||||| | |||||||||| Sbjct 30117703 TTGATTTTTACCTCATTTCTTGATAAAATGGGTATA--AAAAAGCGACCTTTTTAATGGT 30117646 Query 1202 -GTTTACTATACATGGATATCCTCACACTCAAAGTTTGGCGATGGAGAGTGTGGGGATTT 1260 |||| ||||| |||||||||||| ||||||| |||||||| || |||||||||||||| Sbjct 30117645 TGTTTCTTATAC-TGGATATCCTCATACTCAAATTTTGGCGAAGGCGAGTGTGGGGATTT 30117587 Query 1261 TT 1262 || Sbjct 30117586 TT 30117585 Score = 120 bits (132), Expect = 8e-23 Identities = 186/262 (71%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 13569 AATCAAGAAACTCTTGTTAGAGCTATCCTTTACGGCTACGAGGTCGAAAAAGAGAAGCGG 13628 || |||||||| | | | | ||| || |||||||||||||||| |||||||||||| Sbjct 30105061 AACCAAGAAACATTCGCTCGTGCTTGGCTGGACGGCTACGAGGTCGAGAAAGAGAAGCGG 30105002 Query 13629 TATTTGGTGAAGATGAAGGGAATGCAGAAAGATTGCGTTGCACTAAAAAAGAATAAAGAT 13688 |||||||||||| |||| || || | ||| | | | ||||| | |||| || Sbjct 30105001 TATTTGGTGAAGGTGAAAGGTATTGTGTGTAATTCGATGGTATTAAAACATAATATCAAT 30104942 Query 13689 GGTGGTTATTGGTATCTCAG---CGATACGTACCCGTATGGTTCTACAATCA-ACATTCA 13744 | | | ||||||| | || | | || | || || | || |||| || || Sbjct 30104941 GAAGATACTTGGTATATGAGTAACAAAACAAATTA-TACGGATTTAAAATCTTAC---CA 30104886 Query 13745 CACCCGCAAAGAGCTTGAAGATGCTGGGTTCGGCTGGGTGTTTGACTGCCCTGGCATTGA 13804 ||| |||||||| || ||| | || || | |||||||||||| ||||| || |||| Sbjct 30104885 CACACGCAAAGAACTAGAACAAGCCAACTTTGACTGGGTGTTTGATTGCCCAGGAGTTGA 30104826 Query 13805 AGTTGAGGAGGTGGAGTGATGG 13826 |||||||||||||||||||||| Sbjct 30104825 AGTTGAGGAGGTGGAGTGATGG 30104804 Score = 89.7 bits (98), Expect = 1e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 13183 TGGGGCAATGCGATTAAGTATCTATTGCGTTTCCAGAGCAAGAATGGGTTGGAAGACCTG 13242 |||||||| || || |||||| | | |||||||| | || ||||| | || |||||| Sbjct 30101575 TGGGGCAACGCAATCAAGTATATGCTTCGTTTCCAAAAGAAAAATGGTCTTGAGGACCTG 30101516 Query 13243 AAAAAAGCCAGAAAAAATCTGGATTGGTTGATTGAGGAGATGGA 13286 || ||||| | || || || ||||||||||||||||||||||| Sbjct 30101515 AAGAAAGCACGCAAGAACCTTGATTGGTTGATTGAGGAGATGGA 30101472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125113562856900