Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011142.1 Length=47453 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 1e-15 >seq18 Length=80077792 Score = 96.9 bits (106), Expect = 1e-15 Identities = 146/203 (72%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 46323 GGAATAATTTCAATTGCTTCCAGCCACACACTATCAACAGCGGCAACAATCTTGCTGTCA 46382 || ||||||||||| || || ||||| || |||||| || | |||||||||||| Sbjct 57332688 GGGATAATTTCAATCGCCTCTAGCCAAACGGAATCAACCTCGCCGCAAATCTTGCTGTCT 57332747 Query 46383 T-TTGTT--ACGCCATGAATTGCACACGCA-GAAAGTGAAATTGATTCTTTTGCTTTCCA 46438 | ||||| | ||| || |||| |||| || || |||||||||||||| ||| Sbjct 57332748 TCTTGTTTGATGCCGTGTCGTGCA-ACGCCTGACAGGCTGATTGATTCTTTTGCCCACCA 57332806 Query 46439 ATAATACATTCGTCGAGCGTTAATCAAGATAACTTCATTTCCTGACTTTTCAGACAATTC 46498 | ||||| || || || || ||| || |||||||| |||| ||||| |||| | Sbjct 57332807 TTTGTACATACGGCGTGCTTTCGTCAGAATCACTTCATTGCCTGCCTTTTGGCTCAATAC 57332866 Query 46499 ACCAAACCAAACTCCGGCGGAAT 46521 || |||||||| || ||||||| Sbjct 57332867 TCCGAACCAAACGCCTGCGGAAT 57332889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151727954955750