Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011271.1 Length=155372 Score E Sequences producing significant alignments: (Bits) Value seq18 167 2e-36 >seq18 Length=80077792 Score = 167 bits (184), Expect = 2e-36 Identities = 551/842 (65%), Gaps = 26/842 (3%) Strand=Plus/Plus Query 49972 AGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAACGTCC 50031 |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 50032 TGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTGCTGGACGACCTGG 50091 | |||| || | || || || || ||| | ||||||||||| || ||| | || Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 50092 GCCAGGCCTACATGCTGCACGGCAATGAGGGCGAGATCCGCATCACCCCCTTCGAGGGCA 50151 ||||||| || || ||||| || ||| || || | ||| || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 50152 AGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAAGACC 50211 ||||| | |||| | ||||||||||| || |||||| || || || || || Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 50212 TGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGATATGACCAAGCAGGCCAT 50269 | | | || |||| || | || ||||| | ||||| | | || | || || Sbjct 39945367 TTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTAT 39945424 Query 50270 CATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAAGCTGCAGCGGTCTCCTACCG 50329 ||| | ||| |||||||| || || || ||| |||||| ||| | || | Sbjct 39945425 TATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTA---TTTCGCAGTT 39945481 Query 50330 CGTCGTGGACAGCTCGGCTCAGC-CGGGC-GTCGGCGCACTGCCCAACGAGATCACCATC 50387 | | ||| | ||| | || || | | || || |||| ||||| || |||||| Sbjct 39945482 CCAGGCTAACAACCCGGAT--GCTCGTACTGGTGGTGCTTTGCCGAACGAAATTACCATC 39945539 Query 50388 GCAGGCTCGCACCTGATGCCCGAT---GATCTCTACACGGCGGTGACCTACACCG---AC 50441 || || || || ||| | ||||| || | || || | || ||| || Sbjct 39945540 GCT---TCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATAC 39945595 Query 50442 CAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCTGTAC 50501 | ||||||||||| || ||| | ||| || | | || ||||| ||| | ||| Sbjct 39945596 C--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTAC 39945653 Query 50502 CGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGCGAGCGC 50561 || ||||| |||||| || |||||||| ||||| || || || ||||| || Sbjct 39945654 CGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAACT 39945713 Query 50562 ATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCGT 50620 ||| | ||||| || |||||||| || || || |||| ||| ||| ||||| | Sbjct 39945714 ATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAAT 39945772 Query 50621 CTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCGATGT 50680 || || || || | || || ||||| || || | || || |||||||| || ||||| Sbjct 39945773 GTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATGT 39945832 Query 50681 CGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTCATGGACGAGCTGGTCGG 50740 ||||| |||||||||| || ||| | | || ||||| ||||| || || |||| Sbjct 39945833 GGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCGG 39945892 Query 50741 CATGGCCGTGCTCAACCCAAGGGGCATCGTGATTTTGCGTAAG-GCTTGATCCGTATAAC 50799 |||||| | |||||| | || || ||| | |||||||| ||| | | |||||| Sbjct 39945893 CATGGCTATTCTCAACGCCGCTGGTATTGTGGCTCTGCGTAAGAGCTAGTTAGTTATAAC 39945952 Query 50800 CA 50801 || Sbjct 39945953 CA 39945954 Score = 105 bits (116), Expect = 7e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 45493 GGGCCATCTCGGCGCGAGTTAACCAGAATTACGATGGTTGGCCATCAGACGAGCTAAAGA 45552 |||| || || | ||||| |||||||| | |||| ||||| || || || || | Sbjct 39942173 GGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAAA 39942232 Query 45553 AGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTCGTCAACCACGAGAACTACGACCCCA 45612 |||| | ||||| | || ||||| || ||||| ||||| | || | ||||||| Sbjct 39942233 AGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCCA 39942292 Query 45613 AGAAGGCCCGGGGAGTTGTTGTCGCGGCTCGGTACGTCGAGAACGGCAATGACAAGTTCA 45672 ||| ||||| || |||||||| || ||| | || || |||| || || |||| || Sbjct 39942293 CGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTACA 39942352 Query 45673 TCGAGGTCATTCAGGAAATCGACGCCAAGCGTTTCCCAAAGCTGGCCCACGAGATCCGCA 45732 |||| |||||||||||| |||| || || ||||| ||| || | || || Sbjct 39942353 TCGAAGTCATTCAGGAAGTCGATGCAGAGAAATTCCCTTTGCTTGCAAAAGAACTCATTG 39942412 Query 45733 CCGGCGGACTTGACTCTGTGTCGATGGG 45760 || ||| | |||||||| || ||||| Sbjct 39942413 AAGGTGGATTAGACTCTGTTTCTATGGG 39942440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497062244668000