Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq18 244 1e-59 >seq18 Length=80077792 Score = 244 bits (270), Expect = 1e-59 Identities = 562/832 (68%), Gaps = 31/832 (4%) Strand=Plus/Plus Query 51113 CATGATCGGCCCGATCCAGCTGCAGCTGCGCTACCAGGGCATTCTCCGCAACGTCCTCCT 51172 |||||| || || ||||||||| ||||||| || ||||| ||| | |||||||| || | Sbjct 39945131 CATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTCTTTT 39945190 Query 51173 GGAGGACACGCTGACGCCGGGTATCCCGATCGAGTACGACGTGCTCGACGACCTCGGCCA 51232 ||| || | || ||||||| | ||| | |||||||||| || ||| | ||||| Sbjct 39945191 GGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGGGCCA 39945250 Query 51233 GGCGTACATGCTGCACGGCAACGAGGGTGAAGTGAAGATCACCCCGTTCGAGGGCAAGCG 51292 ||| || || ||||| || || |||||||| ||| ||| ||| |||| ||||| Sbjct 39945251 GGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAAAGCG 39945310 Query 51293 TGTGCCGGTGCAGCTGTTCCGCATCGCGTCGTTCCCGCAGATCAAGAAGGAAGACCTGT- 51351 ||||| ||| | ||||||||||| || | |||||| || || || || || | | Sbjct 39945311 TGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATGTTTG 39945370 Query 51352 -ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGGCCATCATG 51410 | || |||| || | || ||||| | ||||| | | || | || || ||| Sbjct 39945371 GATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTATTATG 39945428 Query 51411 CGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAGGCTGC-AGCGGTCAGCTACCGTGT 51469 | ||| |||||||| || || || ||| |||| | ||| | ||| | | | | Sbjct 39945429 AAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTATTTCGCAGTTCCAGGCT 39945488 Query 51470 CGTGGACAGCTCGGCTGTGCCGGGTCCCGGCGGCGGCGCTCTTCCGAACGAGATCACGAT 51529 ||| | ||| || | || | || || | || | |||||||| || || || Sbjct 39945489 A----ACAACCCGGATGCTC---GTACTGGTGGTG---CTTTGCCGAACGAAATTACCAT 39945538 Query 51530 CGCGGGCACGCACCTCATGCCCG---ACGATCTGTACACCGCCGTCACCTACACCG---A 51583 ||| | || ||| ||| |||||||||| |||| || | || ||| | Sbjct 39945539 CGCTTCCG---ACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATA 39945594 Query 51584 CCAGCGTCAGCTGGACTCGTCGCGCCTGCTGGCCAACCCGCAGGAATACCGCGACCTGTA 51643 || ||||||||||| || || ||| | ||| || | | || ||||| ||| | || Sbjct 39945595 CC--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTA 39945652 Query 51644 CCGGTGGGACATCAACACCACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGTGAGCG 51703 ||| ||||| |||||| || |||||||| ||||| || || || |||||||| Sbjct 39945653 CCGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAAC 39945712 Query 51704 GATCGTGCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACTG 51762 ||| ||||| || |||||||| || || || |||| ||| ||| ||||| Sbjct 39945713 TATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAA 39945771 Query 51763 TCTACCTGACCCCGGAGCCGCAGTTCCTCGGCGTGTTCCCGGTCATGTACTCCCTCGACG 51822 | || || || || | || | ||||| || || | || || |||||||| || || | Sbjct 39945772 TGTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATG 39945831 Query 51823 TCGAGGAGAACAACATGGTGGAGCAGTTCCACAAGGGCTGGGTCATGGACGAGCTGGTCG 51882 | ||||| ||||||| ||| || | ||||| | || ||||| ||||| || || ||| Sbjct 39945832 TGGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCG 39945891 Query 51883 GCATGGCCATCCTCAAC-CCGCGTGGTATCGTGATCCTGCGCAAGGCCTAGT 51933 ||||||| || |||||| |||| |||||| ||| ||||| ||| ||||| Sbjct 39945892 GCATGGCTATTCTCAACGCCGC-TGGTATTGTGGCTCTGCGTAAGAGCTAGT 39945942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||||||||||||||| ||||||||||| |||| ||| ||||| ||| Sbjct 63086883 GCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGTAGGTTCGAAT 63086942 Query 92675 CCCACTCCCGCCACTAGGT 92693 || | ||||| |||| || Sbjct 63086943 CCTGCCCCCGCTACTAAGT 63086961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526598235438000