Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 219 4e-52 seq16 84.2 2e-11 seq13 82.4 8e-11 >seq25 Length=32766887 Score = 219 bits (242), Expect = 4e-52 Identities = 937/1459 (64%), Gaps = 34/1459 (2%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 10520020 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 10520079 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || |||||| | || | ||||||| | Sbjct 10520080 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGC 10520139 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| || | | ||| ||| | ||||||||||||||| | | || Sbjct 10520140 AGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 10520199 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| ||| | |||| |||| |||| || || ||| || ||||| Sbjct 10520200 TTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCG-AGCTCTGCGGCGAGCTCGCA 10520258 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | | ||| ||||| ||| || || | ||||| | || Sbjct 10520259 GCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGC 10520318 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| || ||| | || |||| ||| | |||||||||||||||||||||| || Sbjct 10520319 TTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCC 10520378 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGAT 153492 || ||||| || | || || |||| | |||| || | | || |||| | Sbjct 10520379 GATCCCGATCGGCCTGTGGCGCTTGTTG-GAAGTCTCGGCTTCGGGAACCGGGTAGTAGT 10520437 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || ||||| || ||||||||||| ||| | || || || | | || |||| Sbjct 10520438 TGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCT 10520497 Query 153553 CGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 ||| || | ||| || | || |||| ||| || | ||| || || ||||| Sbjct 10520498 TGAAGTCGAAAGTCCGCTCTGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAGG 10520553 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 || ||||||||| ||| || | | |||||| ||| | ||| | ||||||||||||| Sbjct 10520554 TTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTG 10520613 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 || || ||| ||||| || ||||| ||||| || | ||||| ||||| ||| ||||| Sbjct 10520614 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 10520673 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC 153790 ||||| || ||||| ||| || | |||| ||| | || || | |||||| Sbjct 10520674 ATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGC 10520732 Query 153791 TCGCACC-CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACT 153849 |||| | || | | || || |||| ||| ||| || ||| |||| Sbjct 10520733 CTTCACCACCCTTTTCA-CTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACT 10520791 Query 153850 CGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATA 153908 | || || |||| ||| | || || ||||||| | || |||||||||| ||||| Sbjct 10520792 CCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGTCC 10520850 Query 153909 TCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 | || | | || | ||||||||| || || | ||| | ||||| | ||||| Sbjct 10520851 TGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCT 10520910 Query 153969 C--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGT 154026 | || | ||| |||||| || |||| ||||| | || | | | | || Sbjct 10520911 CTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGT 10520968 Query 154027 CGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCCTGAT 154083 || |||||| || || | || | ||| | ||| || | | || |||||||| | Sbjct 10520969 CGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGT 10521028 Query 154084 CGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGC 154143 | |||| || | | |||||| | || | || ||| || ||| ||| | | | ||| Sbjct 10521029 CAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGC 10521088 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-----ACGCC 154198 ||||||| ||| | ||| || || | |||||| | | ||||| Sbjct 10521089 CGTTGGTGCCTGCGATGTAGCTTCC-----CGTCGATCGGATGCAGCTCACCGCCACGCC 10521143 Query 154199 AATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTC 154258 || ||||| || |||| || ||| ||||| | ||| || ||||||||| || Sbjct 10521144 GATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTC 10521203 Query 154259 GATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCC 154318 |||||| ||||| | | |||||| ||| || ||| ||||| | || || Sbjct 10521204 GATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCC 10521263 Query 154319 CGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGT 154378 || |||||||| ||| ||||| || ||| || | || | | ||| || Sbjct 10521264 GGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGT 10521323 Query 154379 TTCGATGGCGTCTTCGATATCATCG-CCGTGAATGCCGAGCGCGACGCGCATGAGCATGT 154437 |||| |||| | ||||| || ||| ||||| || || | || || | ||||||||||| Sbjct 10521324 CTCGACGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGT 10521382 Query 154438 GCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTT 154497 ||||||| || ||||| ||| | || ||||||| || || | || || || | Sbjct 10521383 GCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCT 10521442 Query 154498 TGTAACCGAAATACTTGTA 154516 || | ||||| | ||||| Sbjct 10521443 TGAAGCCGAAGAAGTTGTA 10521461 >seq16 Length=24388307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || | ||||||||| || || || || || || ||||| || | | Sbjct 2613239 GACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2613180 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| | |||| || | Sbjct 2613179 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TGAATCTTTGCCTTCAC 2613121 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | | ||||||||| | || | || || ||||| || ||||| Sbjct 2613120 GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTT 2613061 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2613060 CACGAAAATCTGCAT 2613046 >seq13 Length=27080333 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | || ||||| | |||||| |||||| | || ||| ||||| ||||||||| | Sbjct 15278733 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15278792 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || | || | ||||| ||||| ||| ||||||||||||| Sbjct 15278793 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15278832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262244918000