Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011398.1 Length=50930 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 3e-16 >seq18 Length=80077792 Score = 98.7 bits (108), Expect = 3e-16 Identities = 200/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 43311 TTTTTTACAGTTACAAAACTTATTAGAGAACTCAAAGAAGAAGATAGACCCAAGTATTTA 43370 ||||||||| || |||| || | | | ||||||||||||| |||| | | | Sbjct 66850250 TTTTTTACATTTGTTGAACTCATCAAAAGCCAAAAAGAAGAAGATAAACCCGAATGGGTT 66850191 Query 43371 CTTATTGAAAACGTTAAAAATCTACTT---AGTGTTAATGGAGGATTTGATTTCCTCAAA 43427 ||| ||||||| |||||| || | |||| | ||| || |||| ||| | Sbjct 66850190 CTTCTTGAAAATGTTAAAGGACTTTTATCAAGTGGTGGGGGAAGA---GATTATCTCGAC 66850134 Query 43428 GTTCTCGTTGAACTGGATGAAATCGGCTATGATGCAGAGTGGCAAGTTCTTAATTCTAAA 43487 |||| | |||||||| || || || || |||||||| || || || ||| Sbjct 66850133 TATCTCTCTATCTTGGATGAATCAGGGTACGACCTTGAATGGCAAGTGCTCAACTCAAAA 66850074 Query 43488 AACTTCGGAGTACCCCAAAATAGAGAACGAATATTCATTGTTGGACATTTTAGAGGACGA 43547 | | ||||||||| |||||||||||||| || | | | | |||||| ||||| || | Sbjct 66850073 GATTACGGAGTACCACAAAATAGAGAACGCATCTATACTATCGGACATCTTAGAAGAAAA 66850014 Query 43548 AGTACACGAAAAGTATTTCCTATCGAAAGAAAAAGTAGAAAAAATCTTGAGCAACT 43603 || |||||||||| | ||| || ||| |||| || | ||||| ||||||| Sbjct 66850013 GGTCGACGAAAAGTACTACCTCTCAGCAGAGAAAGCAGTAGCCATCTTAAGCAACT 66849958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162854351652600