Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25 203 3e-47 seq13 104 2e-17 seq18 96.9 3e-15 >seq25 Length=32766887 Score = 203 bits (224), Expect = 3e-47 Identities = 516/770 (67%), Gaps = 24/770 (3%) Strand=Plus/Plus Query 146048 CCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACA 146107 |||||| ||| | ||||||| | ||| ||||| |||| || || | | || | Sbjct 10519958 CCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGA 10520017 Query 146108 CGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGG 146167 |||||||||| ||| ||||| ||||||||||| || || ||||| || || | || | Sbjct 10520018 TGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCG 10520077 Query 146168 TAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC--- 146224 | |||||| ||||| ||||| ||| |||||||||||| | ||||||||| Sbjct 10520078 TGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCA 10520137 Query 146225 GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCA 146284 | || || | | ||| |||| | || || || | | | ||||||| || | Sbjct 10520138 GCAGCTT----CCAGTCC-CAAAGG-TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGA 10520191 Query 146285 TAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-G 146340 |||| || || | | || |||||||| || || || ||| | ||| | Sbjct 10520192 GGATGCCCTTGCTGACGGGCGAGCC---CTCGTACGTCTCGTAGGGGCCGA-GCTCTGCG 10520247 Query 146341 GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTG 146400 || || |||||||| || ||||| || | ||| |||||||| ||| | |||| Sbjct 10520248 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTG 10520307 Query 146401 ACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGA 146458 | || ||| || | | || ||| | ||| | || | || | ||||||||||| | Sbjct 10520308 A-GCAGCTGAGCTTCGGGACTTTCGAAAGGG-TGCCGCATCAGGATGAAGGCGTCGGCCA 10520365 Query 146459 GACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAG 146518 ||||||| | |||| || | || | ||| |||||| || | || | | | Sbjct 10520366 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAA 10520425 Query 146519 TGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAAC 146578 || |||| |||| ||||||||||||||||||| || ||||| | || || | Sbjct 10520426 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 10520485 Query 146579 GATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGA 146638 |||| |||| || || | | | ||| |||| || |||||| ||||| Sbjct 10520486 AGGCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGA 10520542 Query 146639 TAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGC 146698 | ||||||| ||| || ||||| |||||||||| | |||| ||| | ||| | || Sbjct 10520543 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 146699 AGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGT 146758 |||||||||||||||||||| |||||| || | ||||| || | ||||||| | || Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 146759 CCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 |||||||||||||||| || |||||||||| | || ||||| |||| Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATG 10520712 >seq13 Length=27080333 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| ||| || ||||| ||| || ||||| ||||| Sbjct 11062561 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 11062620 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 11062621 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 11062680 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || || | ||| | ||||||||||| || ||| Sbjct 11062681 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 11062740 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 11062741 TTCACAAAGATCTGCAT 11062757 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| ||| || ||||| ||| || |||||||| ||| Sbjct 11060550 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 11060609 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || |||| Sbjct 11060610 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 11060669 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || | ||| | ||||||||||| || || Sbjct 11060670 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 11060729 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 11060730 TTGACAAAGATTTGCAT 11060746 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 |||||||| | |||||| |||||| |||||||| |||||| ||||| ||||| | | Sbjct 15278741 ACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 15278800 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||||| ||||||||||||||||||||| Sbjct 15278801 CTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15278832 >seq18 Length=80077792 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| ||| || ||||| ||| || ||||| || ||| Sbjct 51870076 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 51870135 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| || || |||| Sbjct 51870136 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCTTG 51870195 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | |||||||| || || || Sbjct 51870196 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTC 51870255 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 51870256 TTGACGAAGATCTGCATG 51870273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500651406000