Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25 178 1e-39 seq13 95.1 1e-14 >seq25 Length=32766887 Score = 178 bits (196), Expect = 1e-39 Identities = 891/1400 (64%), Gaps = 36/1400 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 10521404 AAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 10521345 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| ||| || ||| | | |||| | || | ||||| ||||| Sbjct 10521344 GACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 10521285 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 10521284 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTC 10521225 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || || | |||||| | ||| Sbjct 10521224 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 10521165 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | ||||| || |||||| ||| | | | || | || |||||| Sbjct 10521164 TCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 10521106 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| | ||||| |||| | | || |||| | | | |||||| |||||||||| || Sbjct 10521105 CATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAA 10521046 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCT 123313 | ||| ||| |||| |||||||||||||| | | | || || | || || ||||| Sbjct 10521045 CACCGCTCGGTACGTTGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCT 10520986 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 || || |||||| | || |||| ||| || | | | || |||| || ||| Sbjct 10520985 GGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 10520926 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 10520925 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAG 10520866 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || | | || | ||||| | ||||||||| | || |||||| || || || Sbjct 10520865 AGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCTGGGCTGGACG 10520807 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547 | | || | |||| || || | ||| | |||| ||| ||||| | | Sbjct 10520806 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGA 10520747 Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 | ||| | || | | | ||| | | || | | || ||||| | || ||| Sbjct 10520746 AAAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 10520692 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| || || |||||||||||||| ||||| ||||||||||| | ||| ||| || Sbjct 10520691 AACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAA 10520632 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA---CAGCGATGC 123724 | |||| || || || || || || || ||| | || | | || || |||| | | Sbjct 10520631 CCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGA 10520572 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGAAA 123780 || | |||||||| || || |||| || || | | || | ||| | | | Sbjct 10520571 CG---AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 10520515 Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| |||| | ||| | | ||| | | || || | || || || | | Sbjct 10520514 GCGG-ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 10520456 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG-CGCGTTTGTCTAATTTGAAA 123899 |||| || ||||| | || | || || | |||| || | | || || | Sbjct 10520455 ACAAGATCATCGACATCAACTACTACCCGGTTCCCGAAGCCGAGACT-TCCAACAAGCGC 10520397 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||||| ||| |||| | ||| | || || |||||||||| || | || |||| Sbjct 10520396 CACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCAC 10520337 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 || | |||||| |||||| || |||| || | || || ||| || || || || Sbjct 10520336 CCTTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATGTTCGAGACCATCTACCAC 10520277 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| ||||||| |||||||| || || | | |||| | ||||| | |||| | Sbjct 10520276 GCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAG 10520217 Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| ||||| | ||| || || | ||||||||||||||| | || ||||| | Sbjct 10520216 GGCTCGCCCGTC-AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGA 10520158 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196 | |||||||||| | | || || | |||| | ||||| || | ||| Sbjct 10520157 CCTTTGGGACTGGAAGCTGCTGAAGGAA--AAGATCGGCAAACACGGCGTGAGGAACAGC 10520100 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| || ||||| |||||| ||||| |||| || || || | || |||||||| ||| Sbjct 10520099 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 10520040 Query 124257 TTCGAGCCGTTCACTAACAA 124276 ||||| ||| ||| | ||| Sbjct 10520039 ATCGAGGCGTACACCAGCAA 10520020 >seq13 Length=27080333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 15278844 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 15278785 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || ||| | ||||||| Sbjct 15278784 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATTGTTGAATACA 15278733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003058749000