Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq18 152 2e-32 >seq18 Length=80077792 Score = 152 bits (168), Expect = 2e-32 Identities = 419/630 (67%), Gaps = 14/630 (2%) Strand=Plus/Minus Query 17852 TGCTGATGTTTATGTTAAACTAGAAAGCTTCAACCCTGGAGGTTCGGTCAAAGACCGTAT 17911 ||| ||||| ||||||||||||||| || ||||||||| || || ||||||||||| Sbjct 60325861 TGCAGATGTCTATGTTAAACTAGAAGCTTTTAACCCTGGATCGTCAGTAAAAGACCGTAT 60325802 Query 17912 TGCTTTGAAAATGATTCAACAAGCACA-CAAGATTGGACAACTTAAAGAAGAACAAGCTA 17970 ||| | | |||||| || |||| | |||||| | | || ||| | ||| Sbjct 60325801 TGCCCTTAGCATGATTGAAAAAGCGGAACAAGATGGTATT-CTAAAACCGGGTGCTACTA 60325743 Query 17971 TTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGGAGCAGCTCTTG 18030 |||| ||| |||| ||| || ||||| |||||| | | |||||| || ||| | Sbjct 60325742 TTGTTGAAGCAACGAGTGGAAACACTGGTATCGGTCTTTCATGGGTTGGTGCCGCTAAAG 60325683 Query 18031 GACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAGACAAATTATCC 18090 || || ||| ||| || ||||| ||| | | | ||||||| | | ||||||| Sbjct 60325682 GATATAAGGTTGTTATCGTCATGCCTGAAACGATGAGTGTGGAACGACGTAAGATTATCC 60325623 Query 18091 GTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAAAGGTGCTATCG 18150 || ||||||||| | | || | || |||| ||| |||||||||||||| ||||| | Sbjct 60325622 AAGCCTATGGTGCTGAACTCGTCCTTACTCCTGGTAGCGAAGGAATGAAAGGGGCTATTG 60325563 Query 18151 CTAAAGCCAAAGAAATTGCCAAAGATATTAACGGATTTATACCAATGCAATTTGAGAACT 18210 | ||||| | |||||||||| || | |||| || | ||| | |||||| | || | Sbjct 60325562 CCAAAGCTCAGGAAATTGCCACTGAACGTGACGGTTTCCTTCCACTCCAATTTAATAA-T 60325504 Query 18211 TCTG-GAATCCTACAGCTCATTTTGATAAC-ACAGCTTTTGAAATCATTGATGAACTTAC 18268 | | ||||| || || | ||| |||| |||||| | || | | | Sbjct 60325503 CCAGCTAATCCAGAAGTACA-CGAAAGAACAACAGGAGCTGAAAT-ACTG-----CCTGC 60325451 Query 18269 TAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAACTGGTGGCACTATTAC 18328 | || | | | | |||| ||||| | || ||||| |||||||| || || | Sbjct 60325450 TTTCGGTTCTGATGGACTAGATGCTTTTGTGGGTGGTGTTGGTACTGGTGGAACGATCTC 60325391 Query 18329 TGGAGCAGGTCATTCACTCAAAGAAGAATTTCCTAGCATTAAAATTGTTGGAGTTGAATC 18388 || | ||| | || |||| || | | | | |||| || || || |||||| | Sbjct 60325390 AGGTGTTTCTCACGCTCTTAAAGCAGCAAATTCAAACATTCAAGTTTATGCAGTTGAGGC 60325331 Query 18389 AGCAGAATCACCAGTACTTAGTGGAGGAGAA-CCTGGACCACATAAGATTCAAGGTATTT 18447 || || ||| | || | ||| ||||| || ||||| || || |||||||| || | Sbjct 60325330 AGACGAGTCAGCTATATTGTCTGG-TGAGAAGCCAGGACCGCACAAAATTCAAGGCATCT 60325272 Query 18448 CAGCAGGTTTTATTCCACAAATTCTTGATA 18477 |||| || |||||||| ||| ||||||| Sbjct 60325271 CAGCTGGATTTATTCCTGAAACACTTGATA 60325242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192115142965800