Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_012753.1 Length=37184 Score E Sequences producing significant alignments: (Bits) Value seq18 136 9e-28 >seq18 Length=80077792 Score = 136 bits (150), Expect = 9e-28 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 3609 AATATCGCAGTCGCATCTTTTAGCCTTGCGGTTAACCGTAATTTTAAAGACGCTAAC-GG 3667 ||| | ||||| || |||||| ||||| || ||||||| ||||| || | || || Sbjct 59386095 AATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAA-GAGTCAAAATGG 59386037 Query 3668 AGAACGTGAAACAGACTTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAAAATTTGGC 3727 |||||||| | || ||||||||| ||| || ||||| || || ||||||||| | || Sbjct 59386036 CGAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGC 59385977 Query 3728 TAATTGGGCTAAAAAAGGCGCATTGATTGGAATTACTGGACGCATCCAGACACGTAGCTA 3787 ||| ||||||||||||||| | | || || || || || || |||||||| ||||| || Sbjct 59385976 TAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTA 59385917 Query 3788 TGAAAACCAACAGGGTCAACGAGT 3811 || ||||| || || ||||| || Sbjct 59385916 CGATAACCAGCAAGGACAACGTGT 59385893 Score = 109 bits (120), Expect = 1e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 6469 TTGGATGAACTCGGGTATGATGTGGAATGGCAAGTGCTTAACAGCAAAGATTTCGGAGTA 6528 ||||||||| ||||| || | |||||||||||||| ||| ||||||| ||||||| Sbjct 66850121 TTGGATGAATCAGGGTACGACCTTGAATGGCAAGTGCTCAACTCAAAAGATTACGGAGTA 66850062 Query 6529 CCACAAAACAGGGAACGTTTGTTCATTATTGGACATCTTAGAGGAGAACGTGGACGAAAA 6588 |||||||| || ||||| | | | ||| |||||||||||| || || || |||||||| Sbjct 66850061 CCACAAAATAGAGAACGCATCTATACTATCGGACATCTTAGAAGAAAAGGTCGACGAAAA 66850002 Query 6589 GTTTTTCCTATCA 6601 || | ||| ||| Sbjct 66850001 GTACTACCTCTCA 66849989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118867164711300